Hb_000537_140

Information

Type -
Description -
Location Contig537: 213813-215579
Sequence    

Annotation

kegg
ID rcu:RCOM_0802990
description lupus la ribonucleoprotein, putative
nr
ID XP_002516568.1
description lupus la ribonucleoprotein, putative [Ricinus communis]
swissprot
ID Q93ZV7
description La protein 1 OS=Arabidopsis thaliana GN=LA1 PE=1 SV=1
trembl
ID B9RS49
description Lupus la ribonucleoprotein, putative OS=Ricinus communis GN=RCOM_0802990 PE=4 SV=1
Gene Ontology
ID GO:0000166
description la protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000537_140 0.0 - - lupus la ribonucleoprotein, putative [Ricinus communis]
2 Hb_077048_010 0.1117734986 - - conserved hypothetical protein [Ricinus communis]
3 Hb_054885_020 0.1242809745 - - -
4 Hb_004096_070 0.128022207 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Jatropha curcas]
5 Hb_000453_150 0.1292820912 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
6 Hb_002874_090 0.1307852642 - - PREDICTED: uncharacterized protein LOC105637452 [Jatropha curcas]
7 Hb_061878_010 0.1318445306 - - hypothetical protein CISIN_1g0094072mg, partial [Citrus sinensis]
8 Hb_005260_040 0.1348508939 - - PREDICTED: uncharacterized protein LOC105633768 isoform X1 [Jatropha curcas]
9 Hb_003177_060 0.1366410731 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X1 [Jatropha curcas]
10 Hb_000322_180 0.136848463 - - recA family protein [Populus trichocarpa]
11 Hb_011287_050 0.1375185384 - - PREDICTED: uncharacterized protein LOC105644786 [Jatropha curcas]
12 Hb_009367_080 0.1384069037 transcription factor TF Family: WRKY WRKY transcription factor 42 [Jatropha curcas]
13 Hb_063480_020 0.1406089599 - - unnamed protein product [Vitis vinifera]
14 Hb_002675_110 0.1406534093 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
15 Hb_001034_070 0.141410227 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_002375_110 0.1422881284 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
17 Hb_005725_170 0.1423931114 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
18 Hb_007982_050 0.1441850045 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Jatropha curcas]
19 Hb_086287_010 0.1442769494 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
20 Hb_000184_150 0.1448866679 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]

Gene co-expression network

sample Hb_000537_140 Hb_000537_140 Hb_077048_010 Hb_077048_010 Hb_000537_140--Hb_077048_010 Hb_054885_020 Hb_054885_020 Hb_000537_140--Hb_054885_020 Hb_004096_070 Hb_004096_070 Hb_000537_140--Hb_004096_070 Hb_000453_150 Hb_000453_150 Hb_000537_140--Hb_000453_150 Hb_002874_090 Hb_002874_090 Hb_000537_140--Hb_002874_090 Hb_061878_010 Hb_061878_010 Hb_000537_140--Hb_061878_010 Hb_008160_030 Hb_008160_030 Hb_077048_010--Hb_008160_030 Hb_002675_110 Hb_002675_110 Hb_077048_010--Hb_002675_110 Hb_000352_260 Hb_000352_260 Hb_077048_010--Hb_000352_260 Hb_010417_070 Hb_010417_070 Hb_077048_010--Hb_010417_070 Hb_000174_150 Hb_000174_150 Hb_077048_010--Hb_000174_150 Hb_002375_110 Hb_002375_110 Hb_054885_020--Hb_002375_110 Hb_001034_070 Hb_001034_070 Hb_054885_020--Hb_001034_070 Hb_008143_070 Hb_008143_070 Hb_054885_020--Hb_008143_070 Hb_005260_040 Hb_005260_040 Hb_054885_020--Hb_005260_040 Hb_004040_040 Hb_004040_040 Hb_054885_020--Hb_004040_040 Hb_010053_030 Hb_010053_030 Hb_004096_070--Hb_010053_030 Hb_001454_370 Hb_001454_370 Hb_004096_070--Hb_001454_370 Hb_001235_140 Hb_001235_140 Hb_004096_070--Hb_001235_140 Hb_012114_080 Hb_012114_080 Hb_004096_070--Hb_012114_080 Hb_002157_050 Hb_002157_050 Hb_004096_070--Hb_002157_050 Hb_011689_060 Hb_011689_060 Hb_004096_070--Hb_011689_060 Hb_000453_150--Hb_077048_010 Hb_000157_200 Hb_000157_200 Hb_000453_150--Hb_000157_200 Hb_009367_080 Hb_009367_080 Hb_000453_150--Hb_009367_080 Hb_000322_180 Hb_000322_180 Hb_000453_150--Hb_000322_180 Hb_000453_150--Hb_005260_040 Hb_002045_250 Hb_002045_250 Hb_002874_090--Hb_002045_250 Hb_092000_010 Hb_092000_010 Hb_002874_090--Hb_092000_010 Hb_004544_040 Hb_004544_040 Hb_002874_090--Hb_004544_040 Hb_007062_030 Hb_007062_030 Hb_002874_090--Hb_007062_030 Hb_001552_030 Hb_001552_030 Hb_002874_090--Hb_001552_030 Hb_000017_230 Hb_000017_230 Hb_002874_090--Hb_000017_230 Hb_140049_080 Hb_140049_080 Hb_061878_010--Hb_140049_080 Hb_006355_090 Hb_006355_090 Hb_061878_010--Hb_006355_090 Hb_004109_370 Hb_004109_370 Hb_061878_010--Hb_004109_370 Hb_000139_130 Hb_000139_130 Hb_061878_010--Hb_000139_130 Hb_012092_060 Hb_012092_060 Hb_061878_010--Hb_012092_060 Hb_000037_220 Hb_000037_220 Hb_061878_010--Hb_000037_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.92685 6.14403 3.76861 3.27174 1.83247 6.81385
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.10333 0.93445 1.90365 5.99092 1.54593

CAGE analysis