Hb_001034_070

Information

Type -
Description -
Location Contig1034: 190767-203337
Sequence    

Annotation

kegg
ID rcu:RCOM_1494400
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.13)
nr
ID XP_002516046.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9LK03
description Proline-rich receptor-like protein kinase PERK2 OS=Arabidopsis thaliana GN=PERK2 PE=2 SV=3
trembl
ID B9RQM7
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494400 PE=3 SV=1
Gene Ontology
ID GO:0004672
description proline-rich receptor-like protein kinase perk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01340: 194924-200248 , PASA_asmbl_01341: 194687-195462 , PASA_asmbl_01342: 197642-197847
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001034_070 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_000369_130 0.0769515539 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
3 Hb_000613_080 0.0793875531 - - PREDICTED: mucin-5AC-like [Nicotiana sylvestris]
4 Hb_003916_010 0.0870835908 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
5 Hb_000158_100 0.090306585 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006355_090 0.0906889656 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
7 Hb_001617_060 0.0922642246 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
8 Hb_007426_130 0.0938281365 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
9 Hb_003449_070 0.0938891714 transcription factor TF Family: SNF2 DNA repair helicase rad5,16, putative [Ricinus communis]
10 Hb_001621_130 0.0947670827 - - PREDICTED: pumilio homolog 1-like isoform X1 [Jatropha curcas]
11 Hb_005725_170 0.0975434536 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
12 Hb_000307_210 0.0997741969 - - Transportin 1 isoform 1 [Theobroma cacao]
13 Hb_000158_130 0.1002688249 - - PREDICTED: uncharacterized protein LOC105647950 isoform X1 [Jatropha curcas]
14 Hb_000083_160 0.1004231697 - - Cell division cycle protein, putative [Ricinus communis]
15 Hb_174821_010 0.1007192229 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 14 [Jatropha curcas]
16 Hb_000922_370 0.1008739617 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
17 Hb_011716_020 0.1019561798 - - PREDICTED: uncharacterized protein LOC105637783 [Jatropha curcas]
18 Hb_006478_060 0.1023107291 - - PREDICTED: homocysteine S-methyltransferase 2 isoform X1 [Jatropha curcas]
19 Hb_005143_030 0.1024881981 - - PREDICTED: uncharacterized protein LOC105638843 [Jatropha curcas]
20 Hb_015099_010 0.1047872467 - - PREDICTED: probable glucan 1,3-alpha-glucosidase [Jatropha curcas]

Gene co-expression network

sample Hb_001034_070 Hb_001034_070 Hb_000369_130 Hb_000369_130 Hb_001034_070--Hb_000369_130 Hb_000613_080 Hb_000613_080 Hb_001034_070--Hb_000613_080 Hb_003916_010 Hb_003916_010 Hb_001034_070--Hb_003916_010 Hb_000158_100 Hb_000158_100 Hb_001034_070--Hb_000158_100 Hb_006355_090 Hb_006355_090 Hb_001034_070--Hb_006355_090 Hb_001617_060 Hb_001617_060 Hb_001034_070--Hb_001617_060 Hb_002107_070 Hb_002107_070 Hb_000369_130--Hb_002107_070 Hb_003058_060 Hb_003058_060 Hb_000369_130--Hb_003058_060 Hb_000369_130--Hb_006355_090 Hb_001821_090 Hb_001821_090 Hb_000369_130--Hb_001821_090 Hb_005143_030 Hb_005143_030 Hb_000369_130--Hb_005143_030 Hb_001621_130 Hb_001621_130 Hb_000369_130--Hb_001621_130 Hb_000613_080--Hb_001617_060 Hb_003966_030 Hb_003966_030 Hb_000613_080--Hb_003966_030 Hb_174821_010 Hb_174821_010 Hb_000613_080--Hb_174821_010 Hb_003449_070 Hb_003449_070 Hb_000613_080--Hb_003449_070 Hb_003044_020 Hb_003044_020 Hb_000613_080--Hb_003044_020 Hb_000922_370 Hb_000922_370 Hb_000613_080--Hb_000922_370 Hb_011716_020 Hb_011716_020 Hb_003916_010--Hb_011716_020 Hb_002028_170 Hb_002028_170 Hb_003916_010--Hb_002028_170 Hb_004545_090 Hb_004545_090 Hb_003916_010--Hb_004545_090 Hb_010931_040 Hb_010931_040 Hb_003916_010--Hb_010931_040 Hb_000785_080 Hb_000785_080 Hb_003916_010--Hb_000785_080 Hb_000743_050 Hb_000743_050 Hb_000158_100--Hb_000743_050 Hb_003623_030 Hb_003623_030 Hb_000158_100--Hb_003623_030 Hb_000136_060 Hb_000136_060 Hb_000158_100--Hb_000136_060 Hb_000158_100--Hb_002028_170 Hb_000739_220 Hb_000739_220 Hb_000158_100--Hb_000739_220 Hb_001900_110 Hb_001900_110 Hb_000158_100--Hb_001900_110 Hb_140049_080 Hb_140049_080 Hb_006355_090--Hb_140049_080 Hb_061878_010 Hb_061878_010 Hb_006355_090--Hb_061878_010 Hb_001318_020 Hb_001318_020 Hb_006355_090--Hb_001318_020 Hb_002815_030 Hb_002815_030 Hb_006355_090--Hb_002815_030 Hb_000089_120 Hb_000089_120 Hb_006355_090--Hb_000089_120 Hb_000470_070 Hb_000470_070 Hb_001617_060--Hb_000470_070 Hb_001617_060--Hb_003966_030 Hb_003362_070 Hb_003362_070 Hb_001617_060--Hb_003362_070 Hb_004102_140 Hb_004102_140 Hb_001617_060--Hb_004102_140 Hb_004935_030 Hb_004935_030 Hb_001617_060--Hb_004935_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6907 13.053 5.78965 10.454 11.4411 22.6736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.148 5.36713 6.21657 16.2763 6.50028

CAGE analysis