Hb_004040_040

Information

Type desease resistance
Description Gene Name: ABC_tran
Location Contig4040: 81222-82169
Sequence    

Annotation

kegg
ID pop:POPTR_0006s07370g
description POPTRDRAFT_801885; hypothetical protein
nr
ID XP_002309006.2
description hypothetical protein POPTR_0006s07370g [Populus trichocarpa]
swissprot
ID Q6YUU5
description Putative multidrug resistance protein OS=Oryza sativa subsp. japonica GN=Os02g0190300 PE=3 SV=1
trembl
ID B9HAY0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s07370g PE=3 SV=2
Gene Ontology
ID GO:0016020
description multidrug resistance protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004040_040 0.0 desease resistance Gene Name: ABC_tran hypothetical protein POPTR_0006s07370g [Populus trichocarpa]
2 Hb_002370_030 0.1033128377 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
3 Hb_027136_010 0.1109351105 - - hypothetical protein L484_010426 [Morus notabilis]
4 Hb_030736_070 0.1196344864 - - PREDICTED: general transcription factor IIH subunit 3 isoform X2 [Jatropha curcas]
5 Hb_054885_020 0.120011358 - - -
6 Hb_150346_010 0.1219863496 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
7 Hb_007186_020 0.1275001873 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
8 Hb_002375_110 0.1298776873 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
9 Hb_003939_040 0.1329030773 - - hypothetical protein CICLE_v10014350mg [Citrus clementina]
10 Hb_003471_020 0.1333343759 - - PREDICTED: ADP-ribosylation factor-like protein 8A [Jatropha curcas]
11 Hb_086287_010 0.1384240593 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
12 Hb_178968_050 0.1405358496 - - PREDICTED: probable serine incorporator [Jatropha curcas]
13 Hb_061878_010 0.1409368373 - - hypothetical protein CISIN_1g0094072mg, partial [Citrus sinensis]
14 Hb_027760_070 0.1430232396 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02-like [Jatropha curcas]
15 Hb_143960_010 0.1439664634 - - -
16 Hb_000260_780 0.1445595872 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Jatropha curcas]
17 Hb_004109_370 0.1449700074 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
18 Hb_000630_030 0.1450666427 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 isoform X1 [Populus euphratica]
19 Hb_000120_520 0.1450807963 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
20 Hb_001085_110 0.1459246861 - - T6D22.2 [Arabidopsis thaliana]

Gene co-expression network

sample Hb_004040_040 Hb_004040_040 Hb_002370_030 Hb_002370_030 Hb_004040_040--Hb_002370_030 Hb_027136_010 Hb_027136_010 Hb_004040_040--Hb_027136_010 Hb_030736_070 Hb_030736_070 Hb_004040_040--Hb_030736_070 Hb_054885_020 Hb_054885_020 Hb_004040_040--Hb_054885_020 Hb_150346_010 Hb_150346_010 Hb_004040_040--Hb_150346_010 Hb_007186_020 Hb_007186_020 Hb_004040_040--Hb_007186_020 Hb_002370_030--Hb_150346_010 Hb_062558_010 Hb_062558_010 Hb_002370_030--Hb_062558_010 Hb_002370_030--Hb_027136_010 Hb_148131_010 Hb_148131_010 Hb_002370_030--Hb_148131_010 Hb_000260_780 Hb_000260_780 Hb_002370_030--Hb_000260_780 Hb_027136_010--Hb_150346_010 Hb_000635_200 Hb_000635_200 Hb_027136_010--Hb_000635_200 Hb_002375_110 Hb_002375_110 Hb_027136_010--Hb_002375_110 Hb_178968_050 Hb_178968_050 Hb_027136_010--Hb_178968_050 Hb_027136_010--Hb_000260_780 Hb_027760_070 Hb_027760_070 Hb_030736_070--Hb_027760_070 Hb_146081_010 Hb_146081_010 Hb_030736_070--Hb_146081_010 Hb_008143_070 Hb_008143_070 Hb_030736_070--Hb_008143_070 Hb_001033_050 Hb_001033_050 Hb_030736_070--Hb_001033_050 Hb_000457_140 Hb_000457_140 Hb_030736_070--Hb_000457_140 Hb_000237_190 Hb_000237_190 Hb_030736_070--Hb_000237_190 Hb_054885_020--Hb_002375_110 Hb_001034_070 Hb_001034_070 Hb_054885_020--Hb_001034_070 Hb_054885_020--Hb_008143_070 Hb_005260_040 Hb_005260_040 Hb_054885_020--Hb_005260_040 Hb_000537_140 Hb_000537_140 Hb_054885_020--Hb_000537_140 Hb_150346_010--Hb_000260_780 Hb_000284_230 Hb_000284_230 Hb_150346_010--Hb_000284_230 Hb_150346_010--Hb_178968_050 Hb_000205_280 Hb_000205_280 Hb_150346_010--Hb_000205_280 Hb_000580_050 Hb_000580_050 Hb_150346_010--Hb_000580_050 Hb_010021_030 Hb_010021_030 Hb_007186_020--Hb_010021_030 Hb_001860_040 Hb_001860_040 Hb_007186_020--Hb_001860_040 Hb_011202_020 Hb_011202_020 Hb_007186_020--Hb_011202_020 Hb_000680_110 Hb_000680_110 Hb_007186_020--Hb_000680_110 Hb_007426_130 Hb_007426_130 Hb_007186_020--Hb_007426_130 Hb_000291_090 Hb_000291_090 Hb_007186_020--Hb_000291_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.436185 0.807464 0.484063 0.97992 0.606592 1.03173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0756411 0.178407 0.213362 0.990026 0.354902

CAGE analysis