Hb_002370_030

Information

Type -
Description -
Location Contig2370: 48774-49334
Sequence    

Annotation

kegg
ID rcu:RCOM_0724580
description hypothetical protein
nr
ID XP_012075446.1
description PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KSD0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10714 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24803: 48749-49726
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002370_030 0.0 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
2 Hb_004040_040 0.1033128377 desease resistance Gene Name: ABC_tran hypothetical protein POPTR_0006s07370g [Populus trichocarpa]
3 Hb_150346_010 0.1434630428 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
4 Hb_062558_010 0.145353233 - - PREDICTED: L-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X1 [Populus euphratica]
5 Hb_027136_010 0.1489833602 - - hypothetical protein L484_010426 [Morus notabilis]
6 Hb_148131_010 0.1542433439 - - PREDICTED: ribosome biogenesis protein WDR12-like, partial [Jatropha curcas]
7 Hb_000260_780 0.1551217431 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Jatropha curcas]
8 Hb_012180_010 0.1583836757 - - PREDICTED: (S)-ureidoglycine aminohydrolase [Jatropha curcas]
9 Hb_000401_010 0.1623782221 - - SAB, putative [Ricinus communis]
10 Hb_000205_280 0.1626370815 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
11 Hb_000098_050 0.1646950194 - - BnaCnng11900D [Brassica napus]
12 Hb_003471_020 0.1671651427 - - PREDICTED: ADP-ribosylation factor-like protein 8A [Jatropha curcas]
13 Hb_000580_050 0.1702649746 - - -
14 Hb_165402_010 0.171112985 - - PREDICTED: cullin-1 isoform X3 [Nicotiana sylvestris]
15 Hb_135959_010 0.1737020194 - - hypothetical protein JCGZ_07060 [Jatropha curcas]
16 Hb_000120_520 0.1743883899 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
17 Hb_030736_070 0.1744825079 - - PREDICTED: general transcription factor IIH subunit 3 isoform X2 [Jatropha curcas]
18 Hb_001159_030 0.1754058712 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
19 Hb_009247_010 0.175599029 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
20 Hb_000739_080 0.1762309873 - - PREDICTED: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_002370_030 Hb_002370_030 Hb_004040_040 Hb_004040_040 Hb_002370_030--Hb_004040_040 Hb_150346_010 Hb_150346_010 Hb_002370_030--Hb_150346_010 Hb_062558_010 Hb_062558_010 Hb_002370_030--Hb_062558_010 Hb_027136_010 Hb_027136_010 Hb_002370_030--Hb_027136_010 Hb_148131_010 Hb_148131_010 Hb_002370_030--Hb_148131_010 Hb_000260_780 Hb_000260_780 Hb_002370_030--Hb_000260_780 Hb_004040_040--Hb_027136_010 Hb_030736_070 Hb_030736_070 Hb_004040_040--Hb_030736_070 Hb_054885_020 Hb_054885_020 Hb_004040_040--Hb_054885_020 Hb_004040_040--Hb_150346_010 Hb_007186_020 Hb_007186_020 Hb_004040_040--Hb_007186_020 Hb_150346_010--Hb_000260_780 Hb_150346_010--Hb_027136_010 Hb_000284_230 Hb_000284_230 Hb_150346_010--Hb_000284_230 Hb_178968_050 Hb_178968_050 Hb_150346_010--Hb_178968_050 Hb_000205_280 Hb_000205_280 Hb_150346_010--Hb_000205_280 Hb_000580_050 Hb_000580_050 Hb_150346_010--Hb_000580_050 Hb_103688_010 Hb_103688_010 Hb_062558_010--Hb_103688_010 Hb_002740_040 Hb_002740_040 Hb_062558_010--Hb_002740_040 Hb_000470_110 Hb_000470_110 Hb_062558_010--Hb_000470_110 Hb_002025_270 Hb_002025_270 Hb_062558_010--Hb_002025_270 Hb_000849_080 Hb_000849_080 Hb_062558_010--Hb_000849_080 Hb_024758_020 Hb_024758_020 Hb_062558_010--Hb_024758_020 Hb_000635_200 Hb_000635_200 Hb_027136_010--Hb_000635_200 Hb_002375_110 Hb_002375_110 Hb_027136_010--Hb_002375_110 Hb_027136_010--Hb_178968_050 Hb_027136_010--Hb_000260_780 Hb_003471_020 Hb_003471_020 Hb_148131_010--Hb_003471_020 Hb_148131_010--Hb_004040_040 Hb_001386_010 Hb_001386_010 Hb_148131_010--Hb_001386_010 Hb_148131_010--Hb_062558_010 Hb_181441_010 Hb_181441_010 Hb_148131_010--Hb_181441_010 Hb_009252_050 Hb_009252_050 Hb_000260_780--Hb_009252_050 Hb_002092_070 Hb_002092_070 Hb_000260_780--Hb_002092_070 Hb_000260_780--Hb_000205_280 Hb_000358_100 Hb_000358_100 Hb_000260_780--Hb_000358_100 Hb_000260_780--Hb_000580_050 Hb_000020_160 Hb_000020_160 Hb_000260_780--Hb_000020_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.934061 3.95003 2.14354 5.40665 2.26076 3.9712
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.172644 0.813626 0.443869 4.18657 1.70933

CAGE analysis