Hb_148131_010

Information

Type -
Description -
Location Contig148131: 648-1137
Sequence    

Annotation

kegg
ID pop:POPTR_0017s12880g
description POPTRDRAFT_778605; hypothetical protein
nr
ID XP_012075022.1
description PREDICTED: ribosome biogenesis protein WDR12-like, partial [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KUV1
description Ribosome biogenesis protein WDR12 homolog OS=Jatropha curcas GN=JCGZ_09062 PE=3 SV=1
Gene Ontology
ID GO:0005654
description ribosome biogenesis protein wdr12 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_148131_010 0.0 - - PREDICTED: ribosome biogenesis protein WDR12-like, partial [Jatropha curcas]
2 Hb_003471_020 0.1352715086 - - PREDICTED: ADP-ribosylation factor-like protein 8A [Jatropha curcas]
3 Hb_002370_030 0.1542433439 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
4 Hb_004040_040 0.1617705344 desease resistance Gene Name: ABC_tran hypothetical protein POPTR_0006s07370g [Populus trichocarpa]
5 Hb_001386_010 0.1657981456 - - PREDICTED: uncharacterized protein LOC105632444 [Jatropha curcas]
6 Hb_062558_010 0.1675105223 - - PREDICTED: L-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X1 [Populus euphratica]
7 Hb_181441_010 0.1754186901 - - PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
8 Hb_008029_020 0.1819449064 - - PREDICTED: uncharacterized protein LOC105631777 [Jatropha curcas]
9 Hb_165402_010 0.1852172757 - - PREDICTED: cullin-1 isoform X3 [Nicotiana sylvestris]
10 Hb_012738_030 0.1960989866 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002611_020 0.199779136 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [Populus euphratica]
12 Hb_027136_010 0.2041031364 - - hypothetical protein L484_010426 [Morus notabilis]
13 Hb_060391_010 0.2090142832 - - nucleic acid binding protein, putative [Ricinus communis]
14 Hb_002122_010 0.2103495571 - - -
15 Hb_010003_010 0.2121446532 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]
16 Hb_050912_010 0.2122529929 - - PREDICTED: amidase 1-like isoform X2 [Jatropha curcas]
17 Hb_005892_020 0.2130037427 - - PREDICTED: uncharacterized protein LOC105632170 isoform X1 [Jatropha curcas]
18 Hb_077573_010 0.2152443036 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_181328_010 0.2152616068 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_001437_140 0.2155588816 - - -

Gene co-expression network

sample Hb_148131_010 Hb_148131_010 Hb_003471_020 Hb_003471_020 Hb_148131_010--Hb_003471_020 Hb_002370_030 Hb_002370_030 Hb_148131_010--Hb_002370_030 Hb_004040_040 Hb_004040_040 Hb_148131_010--Hb_004040_040 Hb_001386_010 Hb_001386_010 Hb_148131_010--Hb_001386_010 Hb_062558_010 Hb_062558_010 Hb_148131_010--Hb_062558_010 Hb_181441_010 Hb_181441_010 Hb_148131_010--Hb_181441_010 Hb_003471_020--Hb_004040_040 Hb_027136_010 Hb_027136_010 Hb_003471_020--Hb_027136_010 Hb_150346_010 Hb_150346_010 Hb_003471_020--Hb_150346_010 Hb_000424_150 Hb_000424_150 Hb_003471_020--Hb_000424_150 Hb_002814_060 Hb_002814_060 Hb_003471_020--Hb_002814_060 Hb_002370_030--Hb_004040_040 Hb_002370_030--Hb_150346_010 Hb_002370_030--Hb_062558_010 Hb_002370_030--Hb_027136_010 Hb_000260_780 Hb_000260_780 Hb_002370_030--Hb_000260_780 Hb_004040_040--Hb_027136_010 Hb_030736_070 Hb_030736_070 Hb_004040_040--Hb_030736_070 Hb_054885_020 Hb_054885_020 Hb_004040_040--Hb_054885_020 Hb_004040_040--Hb_150346_010 Hb_007186_020 Hb_007186_020 Hb_004040_040--Hb_007186_020 Hb_165402_010 Hb_165402_010 Hb_001386_010--Hb_165402_010 Hb_010003_010 Hb_010003_010 Hb_001386_010--Hb_010003_010 Hb_051257_010 Hb_051257_010 Hb_001386_010--Hb_051257_010 Hb_000230_180 Hb_000230_180 Hb_001386_010--Hb_000230_180 Hb_001386_010--Hb_002370_030 Hb_103688_010 Hb_103688_010 Hb_062558_010--Hb_103688_010 Hb_002740_040 Hb_002740_040 Hb_062558_010--Hb_002740_040 Hb_000470_110 Hb_000470_110 Hb_062558_010--Hb_000470_110 Hb_002025_270 Hb_002025_270 Hb_062558_010--Hb_002025_270 Hb_000849_080 Hb_000849_080 Hb_062558_010--Hb_000849_080 Hb_024758_020 Hb_024758_020 Hb_062558_010--Hb_024758_020 Hb_181441_010--Hb_165402_010 Hb_050912_010 Hb_050912_010 Hb_181441_010--Hb_050912_010 Hb_181328_010 Hb_181328_010 Hb_181441_010--Hb_181328_010 Hb_009247_010 Hb_009247_010 Hb_181441_010--Hb_009247_010 Hb_077573_010 Hb_077573_010 Hb_181441_010--Hb_077573_010 Hb_006541_040 Hb_006541_040 Hb_181441_010--Hb_006541_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.409209 1.23735 1.43637 2.49813 0.885526 3.00524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.165246 0.524245 1.78029 0.862883

CAGE analysis