Hb_000424_150

Information

Type -
Description -
Location Contig424: 174556-174984
Sequence    

Annotation

kegg
ID rcu:RCOM_0707700
description copper transporter, putative
nr
ID XP_012077176.1
description PREDICTED: copper transporter 5.1-like [Jatropha curcas]
swissprot
ID Q93VM8
description Copper transporter 5 OS=Arabidopsis thaliana GN=COPT5 PE=1 SV=1
trembl
ID A0A067KQB2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07585 PE=4 SV=1
Gene Ontology
ID GO:0016021
description copper transporter

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000424_150 0.0 - - PREDICTED: copper transporter 5.1-like [Jatropha curcas]
2 Hb_074197_020 0.1151768818 - - PREDICTED: uncharacterized protein LOC105645948 [Jatropha curcas]
3 Hb_002814_060 0.1290915279 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 [Jatropha curcas]
4 Hb_002301_310 0.146967611 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.4 isoform X1 [Jatropha curcas]
5 Hb_000482_150 0.1476884699 - - PREDICTED: zinc transporter 4, chloroplastic [Jatropha curcas]
6 Hb_003376_260 0.1514373453 - - PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]
7 Hb_003471_020 0.1559277736 - - PREDICTED: ADP-ribosylation factor-like protein 8A [Jatropha curcas]
8 Hb_004657_030 0.1694156504 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]
9 Hb_013358_080 0.1718226271 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 25-like [Jatropha curcas]
10 Hb_003939_040 0.1772320122 - - hypothetical protein CICLE_v10014350mg [Citrus clementina]
11 Hb_008484_010 0.1800170664 - - hypothetical protein B456_008G050700 [Gossypium raimondii]
12 Hb_008749_030 0.1820427985 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
13 Hb_006508_030 0.1824662911 - - PREDICTED: CDPK-related kinase 1-like [Jatropha curcas]
14 Hb_000258_290 0.1833745003 transcription factor TF Family: TCP PREDICTED: transcription factor TCP15 [Jatropha curcas]
15 Hb_004040_040 0.1834033339 desease resistance Gene Name: ABC_tran hypothetical protein POPTR_0006s07370g [Populus trichocarpa]
16 Hb_000183_050 0.184884322 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
17 Hb_004223_290 0.1850032645 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
18 Hb_041828_010 0.1854305545 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
19 Hb_027136_010 0.185574621 - - hypothetical protein L484_010426 [Morus notabilis]
20 Hb_004884_030 0.1857743766 - - PREDICTED: ammonium transporter 3 member 3 [Vitis vinifera]

Gene co-expression network

sample Hb_000424_150 Hb_000424_150 Hb_074197_020 Hb_074197_020 Hb_000424_150--Hb_074197_020 Hb_002814_060 Hb_002814_060 Hb_000424_150--Hb_002814_060 Hb_002301_310 Hb_002301_310 Hb_000424_150--Hb_002301_310 Hb_000482_150 Hb_000482_150 Hb_000424_150--Hb_000482_150 Hb_003376_260 Hb_003376_260 Hb_000424_150--Hb_003376_260 Hb_003471_020 Hb_003471_020 Hb_000424_150--Hb_003471_020 Hb_074197_020--Hb_002814_060 Hb_004223_290 Hb_004223_290 Hb_074197_020--Hb_004223_290 Hb_074197_020--Hb_003376_260 Hb_000091_060 Hb_000091_060 Hb_074197_020--Hb_000091_060 Hb_000630_030 Hb_000630_030 Hb_074197_020--Hb_000630_030 Hb_007456_040 Hb_007456_040 Hb_002814_060--Hb_007456_040 Hb_086287_010 Hb_086287_010 Hb_002814_060--Hb_086287_010 Hb_006508_030 Hb_006508_030 Hb_002814_060--Hb_006508_030 Hb_001194_020 Hb_001194_020 Hb_002814_060--Hb_001194_020 Hb_002784_030 Hb_002784_030 Hb_002814_060--Hb_002784_030 Hb_002301_310--Hb_003376_260 Hb_002301_310--Hb_074197_020 Hb_002301_310--Hb_002814_060 Hb_002301_310--Hb_006508_030 Hb_004657_090 Hb_004657_090 Hb_002301_310--Hb_004657_090 Hb_006355_020 Hb_006355_020 Hb_000482_150--Hb_006355_020 Hb_000183_050 Hb_000183_050 Hb_000482_150--Hb_000183_050 Hb_000284_230 Hb_000284_230 Hb_000482_150--Hb_000284_230 Hb_003417_010 Hb_003417_010 Hb_000482_150--Hb_003417_010 Hb_001210_050 Hb_001210_050 Hb_000482_150--Hb_001210_050 Hb_119600_050 Hb_119600_050 Hb_000482_150--Hb_119600_050 Hb_024698_010 Hb_024698_010 Hb_003376_260--Hb_024698_010 Hb_116420_040 Hb_116420_040 Hb_003376_260--Hb_116420_040 Hb_005048_140 Hb_005048_140 Hb_003376_260--Hb_005048_140 Hb_003376_260--Hb_004657_090 Hb_004040_040 Hb_004040_040 Hb_003471_020--Hb_004040_040 Hb_148131_010 Hb_148131_010 Hb_003471_020--Hb_148131_010 Hb_027136_010 Hb_027136_010 Hb_003471_020--Hb_027136_010 Hb_150346_010 Hb_150346_010 Hb_003471_020--Hb_150346_010 Hb_003471_020--Hb_002814_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.9711 18.887 10.0718 34.3114 17.3013 39.6633
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.874212 2.05995 6.05702 24.2447 30.3553

CAGE analysis