Hb_000482_150

Information

Type -
Description -
Location Contig482: 211285-213493
Sequence    

Annotation

kegg
ID rcu:RCOM_0797420
description zinc/iron transporter, putative (EC:1.3.1.74)
nr
ID XP_012077285.1
description PREDICTED: zinc transporter 4, chloroplastic [Jatropha curcas]
swissprot
ID Q8LE59
description Fe(2+) transport protein 3, chloroplastic OS=Arabidopsis thaliana GN=IRT3 PE=2 SV=3
trembl
ID A0A067KD89
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07668 PE=4 SV=1
Gene Ontology
ID GO:0016021
description zinc transporter chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44784: 211441-213478 , PASA_asmbl_44785: 211441-213478
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000482_150 0.0 - - PREDICTED: zinc transporter 4, chloroplastic [Jatropha curcas]
2 Hb_006355_020 0.1035583996 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
3 Hb_000183_050 0.1071354453 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
4 Hb_000284_230 0.1094950979 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
5 Hb_003417_010 0.1130496064 - - PREDICTED: protein TPLATE [Jatropha curcas]
6 Hb_001210_050 0.1228227709 - - hypothetical protein JCGZ_06216 [Jatropha curcas]
7 Hb_119600_050 0.1247450835 - - sugar transporter, putative [Ricinus communis]
8 Hb_001801_020 0.1270691946 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
9 Hb_162275_040 0.127279934 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000365_330 0.1285408718 - - zinc finger protein, putative [Ricinus communis]
11 Hb_001059_130 0.1290063372 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
12 Hb_001194_020 0.1293287744 - - microtubule associated protein xmap215, putative [Ricinus communis]
13 Hb_004884_030 0.1297696337 - - PREDICTED: ammonium transporter 3 member 3 [Vitis vinifera]
14 Hb_158092_080 0.1323944922 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
15 Hb_074197_020 0.1325185427 - - PREDICTED: uncharacterized protein LOC105645948 [Jatropha curcas]
16 Hb_000579_240 0.1325880364 - - phosphatidylinositol transporter, putative [Ricinus communis]
17 Hb_000608_300 0.1329668706 - - PREDICTED: protein KRI1 homolog [Jatropha curcas]
18 Hb_000562_050 0.1336372892 - - PREDICTED: uncharacterized protein LOC105635369 [Jatropha curcas]
19 Hb_000358_100 0.133923167 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
20 Hb_022250_100 0.1352082262 - - calnexin, putative [Ricinus communis]

Gene co-expression network

sample Hb_000482_150 Hb_000482_150 Hb_006355_020 Hb_006355_020 Hb_000482_150--Hb_006355_020 Hb_000183_050 Hb_000183_050 Hb_000482_150--Hb_000183_050 Hb_000284_230 Hb_000284_230 Hb_000482_150--Hb_000284_230 Hb_003417_010 Hb_003417_010 Hb_000482_150--Hb_003417_010 Hb_001210_050 Hb_001210_050 Hb_000482_150--Hb_001210_050 Hb_119600_050 Hb_119600_050 Hb_000482_150--Hb_119600_050 Hb_006355_020--Hb_000284_230 Hb_022250_100 Hb_022250_100 Hb_006355_020--Hb_022250_100 Hb_162275_040 Hb_162275_040 Hb_006355_020--Hb_162275_040 Hb_001194_020 Hb_001194_020 Hb_006355_020--Hb_001194_020 Hb_001059_130 Hb_001059_130 Hb_006355_020--Hb_001059_130 Hb_000086_440 Hb_000086_440 Hb_006355_020--Hb_000086_440 Hb_015978_100 Hb_015978_100 Hb_000183_050--Hb_015978_100 Hb_000086_690 Hb_000086_690 Hb_000183_050--Hb_000086_690 Hb_011202_020 Hb_011202_020 Hb_000183_050--Hb_011202_020 Hb_000183_050--Hb_003417_010 Hb_001235_230 Hb_001235_230 Hb_000183_050--Hb_001235_230 Hb_000035_410 Hb_000035_410 Hb_000183_050--Hb_000035_410 Hb_002475_040 Hb_002475_040 Hb_000284_230--Hb_002475_040 Hb_000284_230--Hb_001194_020 Hb_000358_100 Hb_000358_100 Hb_000284_230--Hb_000358_100 Hb_008397_010 Hb_008397_010 Hb_000284_230--Hb_008397_010 Hb_073973_150 Hb_073973_150 Hb_000284_230--Hb_073973_150 Hb_001821_150 Hb_001821_150 Hb_003417_010--Hb_001821_150 Hb_003417_010--Hb_000284_230 Hb_000066_150 Hb_000066_150 Hb_003417_010--Hb_000066_150 Hb_000494_050 Hb_000494_050 Hb_003417_010--Hb_000494_050 Hb_001195_470 Hb_001195_470 Hb_003417_010--Hb_001195_470 Hb_156850_090 Hb_156850_090 Hb_001210_050--Hb_156850_090 Hb_133702_020 Hb_133702_020 Hb_001210_050--Hb_133702_020 Hb_000059_230 Hb_000059_230 Hb_001210_050--Hb_000059_230 Hb_041327_020 Hb_041327_020 Hb_001210_050--Hb_041327_020 Hb_007810_110 Hb_007810_110 Hb_001210_050--Hb_007810_110 Hb_003632_030 Hb_003632_030 Hb_119600_050--Hb_003632_030 Hb_001411_030 Hb_001411_030 Hb_119600_050--Hb_001411_030 Hb_007123_050 Hb_007123_050 Hb_119600_050--Hb_007123_050 Hb_119600_050--Hb_000284_230 Hb_000608_300 Hb_000608_300 Hb_119600_050--Hb_000608_300 Hb_119600_050--Hb_006355_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.1984 27.3764 14.8254 40.7398 31.2161 28.3422
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.60673 7.38339 11.5077 23.5145 44.3317

CAGE analysis