Hb_004657_090

Information

Type -
Description -
Location Contig4657: 87229-108431
Sequence    

Annotation

kegg
ID rcu:RCOM_0550500
description Chromosome-associated kinesin KLP1, putative
nr
ID XP_002533253.1
description Chromosome-associated kinesin KLP1, putative [Ricinus communis]
swissprot
ID Q8GS71
description Kinesin-like protein FRA1 OS=Arabidopsis thaliana GN=FRA1 PE=1 SV=1
trembl
ID B9T4T4
description Kinesin-like protein OS=Ricinus communis GN=RCOM_0550500 PE=3 SV=1
Gene Ontology
ID GO:0005871
description chromosome-associated kinesin kif4a-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44058: 87335-88915 , PASA_asmbl_44059: 100720-103378 , PASA_asmbl_44060: 103554-105122 , PASA_asmbl_44062: 108332-109107
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004657_090 0.0 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]
2 Hb_001508_020 0.1196099166 - - myosin vIII, putative [Ricinus communis]
3 Hb_003376_260 0.1441914208 - - PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]
4 Hb_002681_170 0.1464261974 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
5 Hb_004374_080 0.1466496586 - - PREDICTED: uncharacterized protein LOC105645766 [Jatropha curcas]
6 Hb_000091_060 0.1473836814 - - PREDICTED: galactose oxidase [Jatropha curcas]
7 Hb_012404_070 0.1486083161 - - PREDICTED: uncharacterized protein LOC105629465 [Jatropha curcas]
8 Hb_003814_030 0.1507331463 - - PREDICTED: WAT1-related protein At5g47470-like isoform X2 [Jatropha curcas]
9 Hb_009485_020 0.1522810248 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
10 Hb_018202_050 0.1522812807 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A [Jatropha curcas]
11 Hb_002000_060 0.1532552073 - - PREDICTED: protein LIKE COV 2 [Jatropha curcas]
12 Hb_000347_270 0.1534946896 - - PREDICTED: uncharacterized protein LOC105631376 [Jatropha curcas]
13 Hb_074197_020 0.1554529095 - - PREDICTED: uncharacterized protein LOC105645948 [Jatropha curcas]
14 Hb_002471_180 0.1576451618 - - receptor protein kinase, putative [Ricinus communis]
15 Hb_002301_310 0.1594724067 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.4 isoform X1 [Jatropha curcas]
16 Hb_000566_100 0.1607575928 - - hypothetical protein JCGZ_17993 [Jatropha curcas]
17 Hb_001882_110 0.1610913443 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
18 Hb_003894_040 0.1625503519 - - nucleotide binding protein, putative [Ricinus communis]
19 Hb_000139_230 0.1627203662 transcription factor TF Family: SNF2 PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]
20 Hb_003436_050 0.1644206582 - - arf gtpase-activating protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004657_090 Hb_004657_090 Hb_001508_020 Hb_001508_020 Hb_004657_090--Hb_001508_020 Hb_003376_260 Hb_003376_260 Hb_004657_090--Hb_003376_260 Hb_002681_170 Hb_002681_170 Hb_004657_090--Hb_002681_170 Hb_004374_080 Hb_004374_080 Hb_004657_090--Hb_004374_080 Hb_000091_060 Hb_000091_060 Hb_004657_090--Hb_000091_060 Hb_012404_070 Hb_012404_070 Hb_004657_090--Hb_012404_070 Hb_003529_130 Hb_003529_130 Hb_001508_020--Hb_003529_130 Hb_010925_020 Hb_010925_020 Hb_001508_020--Hb_010925_020 Hb_001369_350 Hb_001369_350 Hb_001508_020--Hb_001369_350 Hb_000021_020 Hb_000021_020 Hb_001508_020--Hb_000021_020 Hb_003894_040 Hb_003894_040 Hb_001508_020--Hb_003894_040 Hb_018202_050 Hb_018202_050 Hb_001508_020--Hb_018202_050 Hb_024698_010 Hb_024698_010 Hb_003376_260--Hb_024698_010 Hb_074197_020 Hb_074197_020 Hb_003376_260--Hb_074197_020 Hb_116420_040 Hb_116420_040 Hb_003376_260--Hb_116420_040 Hb_002301_310 Hb_002301_310 Hb_003376_260--Hb_002301_310 Hb_005048_140 Hb_005048_140 Hb_003376_260--Hb_005048_140 Hb_002249_120 Hb_002249_120 Hb_002681_170--Hb_002249_120 Hb_000031_280 Hb_000031_280 Hb_002681_170--Hb_000031_280 Hb_002092_100 Hb_002092_100 Hb_002681_170--Hb_002092_100 Hb_008556_030 Hb_008556_030 Hb_002681_170--Hb_008556_030 Hb_002805_060 Hb_002805_060 Hb_002681_170--Hb_002805_060 Hb_000809_210 Hb_000809_210 Hb_002681_170--Hb_000809_210 Hb_002000_060 Hb_002000_060 Hb_004374_080--Hb_002000_060 Hb_000270_160 Hb_000270_160 Hb_004374_080--Hb_000270_160 Hb_000139_230 Hb_000139_230 Hb_004374_080--Hb_000139_230 Hb_003872_010 Hb_003872_010 Hb_004374_080--Hb_003872_010 Hb_004374_080--Hb_012404_070 Hb_000566_100 Hb_000566_100 Hb_004374_080--Hb_000566_100 Hb_005843_160 Hb_005843_160 Hb_000091_060--Hb_005843_160 Hb_009485_020 Hb_009485_020 Hb_000091_060--Hb_009485_020 Hb_000091_060--Hb_074197_020 Hb_000258_290 Hb_000258_290 Hb_000091_060--Hb_000258_290 Hb_002498_050 Hb_002498_050 Hb_000091_060--Hb_002498_050 Hb_029866_100 Hb_029866_100 Hb_000091_060--Hb_029866_100 Hb_003436_050 Hb_003436_050 Hb_012404_070--Hb_003436_050 Hb_001163_120 Hb_001163_120 Hb_012404_070--Hb_001163_120 Hb_005408_020 Hb_005408_020 Hb_012404_070--Hb_005408_020 Hb_008246_030 Hb_008246_030 Hb_012404_070--Hb_008246_030 Hb_012404_070--Hb_002249_120 Hb_011609_170 Hb_011609_170 Hb_012404_070--Hb_011609_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.99297 4.77855 6.69984 7.96952 8.93869 11.828
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.02036 0.58754 0.750961 1.85117 5.34078

CAGE analysis