Hb_005843_160

Information

Type -
Description -
Location Contig5843: 127408-128781
Sequence    

Annotation

kegg
ID rcu:RCOM_1407950
description hypothetical protein
nr
ID XP_011005866.1
description PREDICTED: uncharacterized protein LOC105112024 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A067K6R1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12392 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49952: 127333-128595
cDNA
(Sanger)
(ID:Location)		 036_G13.ab1: 127396-127946 , 049_G07.ab1: 127403-127946

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005843_160 0.0 - - PREDICTED: uncharacterized protein LOC105112024 [Populus euphratica]
2 Hb_000091_060 0.0829055762 - - PREDICTED: galactose oxidase [Jatropha curcas]
3 Hb_006831_070 0.1474142792 - - PREDICTED: probable galacturonosyltransferase 4 isoform X2 [Jatropha curcas]
4 Hb_091761_010 0.1577695503 - - Rhomboid protein, putative [Ricinus communis]
5 Hb_008511_060 0.1589004992 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
6 Hb_074197_020 0.1589812707 - - PREDICTED: uncharacterized protein LOC105645948 [Jatropha curcas]
7 Hb_000258_290 0.1618415235 transcription factor TF Family: TCP PREDICTED: transcription factor TCP15 [Jatropha curcas]
8 Hb_009485_020 0.1618490496 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
9 Hb_013818_030 0.1640697844 - - conserved hypothetical protein [Ricinus communis]
10 Hb_132840_100 0.1642059613 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 4 [Jatropha curcas]
11 Hb_000579_060 0.164505113 - - PREDICTED: uncharacterized protein LOC105633849 isoform X1 [Jatropha curcas]
12 Hb_000853_260 0.1678458777 - - PREDICTED: probable galacturonosyltransferase-like 7 [Jatropha curcas]
13 Hb_003376_260 0.1681586716 - - PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]
14 Hb_004657_090 0.1682315049 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]
15 Hb_002498_050 0.1698629156 - - PREDICTED: aspartic proteinase-like [Jatropha curcas]
16 Hb_000366_190 0.1709289334 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
17 Hb_000818_100 0.1735149839 - - PREDICTED: delta(24)-sterol reductase [Jatropha curcas]
18 Hb_133230_010 0.1736885741 - - hypothetical protein L484_001846 [Morus notabilis]
19 Hb_000630_030 0.1737228305 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 isoform X1 [Populus euphratica]
20 Hb_003894_040 0.1765439965 - - nucleotide binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005843_160 Hb_005843_160 Hb_000091_060 Hb_000091_060 Hb_005843_160--Hb_000091_060 Hb_006831_070 Hb_006831_070 Hb_005843_160--Hb_006831_070 Hb_091761_010 Hb_091761_010 Hb_005843_160--Hb_091761_010 Hb_008511_060 Hb_008511_060 Hb_005843_160--Hb_008511_060 Hb_074197_020 Hb_074197_020 Hb_005843_160--Hb_074197_020 Hb_000258_290 Hb_000258_290 Hb_005843_160--Hb_000258_290 Hb_009485_020 Hb_009485_020 Hb_000091_060--Hb_009485_020 Hb_000091_060--Hb_074197_020 Hb_000091_060--Hb_000258_290 Hb_002498_050 Hb_002498_050 Hb_000091_060--Hb_002498_050 Hb_029866_100 Hb_029866_100 Hb_000091_060--Hb_029866_100 Hb_000579_060 Hb_000579_060 Hb_006831_070--Hb_000579_060 Hb_000608_350 Hb_000608_350 Hb_006831_070--Hb_000608_350 Hb_000599_170 Hb_000599_170 Hb_006831_070--Hb_000599_170 Hb_006831_070--Hb_008511_060 Hb_003894_040 Hb_003894_040 Hb_006831_070--Hb_003894_040 Hb_007380_140 Hb_007380_140 Hb_006831_070--Hb_007380_140 Hb_001367_010 Hb_001367_010 Hb_091761_010--Hb_001367_010 Hb_091761_010--Hb_000091_060 Hb_091761_010--Hb_008511_060 Hb_002570_010 Hb_002570_010 Hb_091761_010--Hb_002570_010 Hb_000979_010 Hb_000979_010 Hb_091761_010--Hb_000979_010 Hb_002217_380 Hb_002217_380 Hb_008511_060--Hb_002217_380 Hb_009393_200 Hb_009393_200 Hb_008511_060--Hb_009393_200 Hb_086022_010 Hb_086022_010 Hb_008511_060--Hb_086022_010 Hb_010053_040 Hb_010053_040 Hb_008511_060--Hb_010053_040 Hb_008511_060--Hb_000608_350 Hb_002814_060 Hb_002814_060 Hb_074197_020--Hb_002814_060 Hb_000424_150 Hb_000424_150 Hb_074197_020--Hb_000424_150 Hb_004223_290 Hb_004223_290 Hb_074197_020--Hb_004223_290 Hb_003376_260 Hb_003376_260 Hb_074197_020--Hb_003376_260 Hb_000630_030 Hb_000630_030 Hb_074197_020--Hb_000630_030 Hb_000258_290--Hb_074197_020 Hb_000258_290--Hb_009485_020 Hb_000258_290--Hb_000424_150 Hb_000258_290--Hb_002498_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.4052 22.7762 29.129 53.046 41.3668 33.3702
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.08437 1.04328 13.4198 13.1093 14.6138

CAGE analysis