Hb_002570_010

Information

Type -
Description -
Location Contig2570: 3-956
Sequence    

Annotation

kegg
ID rcu:RCOM_0412680
description hypothetical protein
nr
ID KDP24728.1
description hypothetical protein JCGZ_25329 [Jatropha curcas]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID A0A067JPL7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25329 PE=4 SV=1
Gene Ontology
ID GO:0016740
description o-fucosyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002570_010 0.0 - - hypothetical protein JCGZ_25329 [Jatropha curcas]
2 Hb_001367_010 0.1203287302 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
3 Hb_000979_010 0.1827190272 - - PREDICTED: uncharacterized protein LOC105128288 [Populus euphratica]
4 Hb_091761_010 0.2029577291 - - Rhomboid protein, putative [Ricinus communis]
5 Hb_005618_060 0.2233308839 transcription factor TF Family: bHLH hypothetical protein RCOM_1343120 [Ricinus communis]
6 Hb_000200_070 0.2331588657 - - PREDICTED: CDP-diacylglycerol--serine O-phosphatidyltransferase 1 isoform X1 [Jatropha curcas]
7 Hb_114638_010 0.2458957335 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Jatropha curcas]
8 Hb_003449_060 0.2482893914 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
9 Hb_000197_110 0.2527491321 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000359_300 0.2534498968 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g06470 [Zea mays]
11 Hb_002343_030 0.2535510225 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004374_130 0.2555109289 - - PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]
13 Hb_002475_120 0.259482829 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
14 Hb_133605_010 0.2616133341 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
15 Hb_000544_180 0.2725598504 - - PREDICTED: probable auxin efflux carrier component 1c isoform X1 [Jatropha curcas]
16 Hb_008511_060 0.2730163897 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
17 Hb_008119_030 0.2734563205 - - PREDICTED: peroxidase 63-like [Jatropha curcas]
18 Hb_007749_010 0.2789229449 - - -
19 Hb_000424_080 0.2816735363 - - PREDICTED: endoglucanase 16 [Jatropha curcas]
20 Hb_003605_040 0.2822345738 - - PREDICTED: somatic embryogenesis receptor kinase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002570_010 Hb_002570_010 Hb_001367_010 Hb_001367_010 Hb_002570_010--Hb_001367_010 Hb_000979_010 Hb_000979_010 Hb_002570_010--Hb_000979_010 Hb_091761_010 Hb_091761_010 Hb_002570_010--Hb_091761_010 Hb_005618_060 Hb_005618_060 Hb_002570_010--Hb_005618_060 Hb_000200_070 Hb_000200_070 Hb_002570_010--Hb_000200_070 Hb_114638_010 Hb_114638_010 Hb_002570_010--Hb_114638_010 Hb_001367_010--Hb_000979_010 Hb_001367_010--Hb_091761_010 Hb_001367_010--Hb_000200_070 Hb_003449_060 Hb_003449_060 Hb_001367_010--Hb_003449_060 Hb_000197_110 Hb_000197_110 Hb_001367_010--Hb_000197_110 Hb_000979_010--Hb_005618_060 Hb_000979_010--Hb_091761_010 Hb_000640_140 Hb_000640_140 Hb_000979_010--Hb_000640_140 Hb_002235_270 Hb_002235_270 Hb_000979_010--Hb_002235_270 Hb_005843_160 Hb_005843_160 Hb_091761_010--Hb_005843_160 Hb_000091_060 Hb_000091_060 Hb_091761_010--Hb_000091_060 Hb_008511_060 Hb_008511_060 Hb_091761_010--Hb_008511_060 Hb_000139_120 Hb_000139_120 Hb_005618_060--Hb_000139_120 Hb_005618_060--Hb_001367_010 Hb_007765_070 Hb_007765_070 Hb_005618_060--Hb_007765_070 Hb_005618_060--Hb_091761_010 Hb_000200_070--Hb_003449_060 Hb_003688_010 Hb_003688_010 Hb_000200_070--Hb_003688_010 Hb_000200_070--Hb_000197_110 Hb_004052_180 Hb_004052_180 Hb_000200_070--Hb_004052_180 Hb_001623_080 Hb_001623_080 Hb_000200_070--Hb_001623_080 Hb_001021_160 Hb_001021_160 Hb_114638_010--Hb_001021_160 Hb_001097_060 Hb_001097_060 Hb_114638_010--Hb_001097_060 Hb_002447_020 Hb_002447_020 Hb_114638_010--Hb_002447_020 Hb_000853_260 Hb_000853_260 Hb_114638_010--Hb_000853_260 Hb_162378_010 Hb_162378_010 Hb_114638_010--Hb_162378_010 Hb_009189_020 Hb_009189_020 Hb_114638_010--Hb_009189_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.2478 2.49411 17.9067 31.6616 14.0581 6.52078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.219944 0.0864181 0.749098 0.106703 2.81607

CAGE analysis