Hb_005618_060

Information

Type transcription factor
Description TF Family: bHLH
Location Contig5618: 52549-55397
Sequence    

Annotation

kegg
ID rcu:RCOM_1343120
description hypothetical protein
nr
ID XP_002515170.1
description hypothetical protein RCOM_1343120 [Ricinus communis]
swissprot
ID Q8L5W8
description Transcription factor PIL1 OS=Arabidopsis thaliana GN=PIL1 PE=1 SV=1
trembl
ID B9RN31
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1343120 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription factor pif3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48823: 51540-52920 , PASA_asmbl_48824: 53255-53779 , PASA_asmbl_48826: 54596-54846
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005618_060 0.0 transcription factor TF Family: bHLH hypothetical protein RCOM_1343120 [Ricinus communis]
2 Hb_000979_010 0.1600990443 - - PREDICTED: uncharacterized protein LOC105128288 [Populus euphratica]
3 Hb_000139_120 0.2015875965 - - sugar transporter, putative [Ricinus communis]
4 Hb_001367_010 0.212091685 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
5 Hb_002570_010 0.2233308839 - - hypothetical protein JCGZ_25329 [Jatropha curcas]
6 Hb_007765_070 0.2280254961 - - PREDICTED: mitochondrial uncoupling protein 2 [Jatropha curcas]
7 Hb_091761_010 0.2340568972 - - Rhomboid protein, putative [Ricinus communis]
8 Hb_000197_110 0.2409660116 - - conserved hypothetical protein [Ricinus communis]
9 Hb_017387_030 0.2414319177 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
10 Hb_177152_010 0.2443868348 - - glycosyl hydrolase family 38 family protein [Populus trichocarpa]
11 Hb_002217_380 0.2522373877 - - PREDICTED: uncharacterized protein LOC105643567 [Jatropha curcas]
12 Hb_035436_010 0.2559251512 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
13 Hb_000359_300 0.2586868929 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g06470 [Zea mays]
14 Hb_009393_200 0.2605785354 - - PREDICTED: F-box only protein 13 [Jatropha curcas]
15 Hb_000424_090 0.2606003643 - - PREDICTED: fatty-acid-binding protein 2 [Jatropha curcas]
16 Hb_003449_060 0.2620229337 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
17 Hb_008511_060 0.2621576835 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
18 Hb_134488_010 0.2647560026 - - -
19 Hb_004935_080 0.2651330356 - - AT3g13060/MGH6_17 [Arabidopsis thaliana]
20 Hb_000665_220 0.2652533559 - - catalytic, putative [Ricinus communis]

Gene co-expression network

sample Hb_005618_060 Hb_005618_060 Hb_000979_010 Hb_000979_010 Hb_005618_060--Hb_000979_010 Hb_000139_120 Hb_000139_120 Hb_005618_060--Hb_000139_120 Hb_001367_010 Hb_001367_010 Hb_005618_060--Hb_001367_010 Hb_002570_010 Hb_002570_010 Hb_005618_060--Hb_002570_010 Hb_007765_070 Hb_007765_070 Hb_005618_060--Hb_007765_070 Hb_091761_010 Hb_091761_010 Hb_005618_060--Hb_091761_010 Hb_000979_010--Hb_001367_010 Hb_000979_010--Hb_002570_010 Hb_000979_010--Hb_091761_010 Hb_000640_140 Hb_000640_140 Hb_000979_010--Hb_000640_140 Hb_002235_270 Hb_002235_270 Hb_000979_010--Hb_002235_270 Hb_017387_030 Hb_017387_030 Hb_000139_120--Hb_017387_030 Hb_000424_090 Hb_000424_090 Hb_000139_120--Hb_000424_090 Hb_000245_160 Hb_000245_160 Hb_000139_120--Hb_000245_160 Hb_027402_030 Hb_027402_030 Hb_000139_120--Hb_027402_030 Hb_010931_060 Hb_010931_060 Hb_000139_120--Hb_010931_060 Hb_001367_010--Hb_002570_010 Hb_001367_010--Hb_091761_010 Hb_000200_070 Hb_000200_070 Hb_001367_010--Hb_000200_070 Hb_003449_060 Hb_003449_060 Hb_001367_010--Hb_003449_060 Hb_000197_110 Hb_000197_110 Hb_001367_010--Hb_000197_110 Hb_002570_010--Hb_091761_010 Hb_002570_010--Hb_000200_070 Hb_114638_010 Hb_114638_010 Hb_002570_010--Hb_114638_010 Hb_008511_060 Hb_008511_060 Hb_007765_070--Hb_008511_060 Hb_000270_870 Hb_000270_870 Hb_007765_070--Hb_000270_870 Hb_004724_470 Hb_004724_470 Hb_007765_070--Hb_004724_470 Hb_048476_150 Hb_048476_150 Hb_007765_070--Hb_048476_150 Hb_024836_010 Hb_024836_010 Hb_007765_070--Hb_024836_010 Hb_002471_180 Hb_002471_180 Hb_007765_070--Hb_002471_180 Hb_005843_160 Hb_005843_160 Hb_091761_010--Hb_005843_160 Hb_000091_060 Hb_000091_060 Hb_091761_010--Hb_000091_060 Hb_091761_010--Hb_008511_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.03616 0.658034 5.28392 6.41062 2.65749 5.60183
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.29204 0.0957414 0.0362422 0 0.565366

CAGE analysis