Hb_114638_010

Information

Type -
Description -
Location Contig114638: 5423-6286
Sequence    

Annotation

kegg
ID pop:POPTR_0014s11290g
description POPTRDRAFT_572581; hypothetical protein
nr
ID XP_012066600.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Jatropha curcas]
swissprot
ID P0C7Q7
description Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1
trembl
ID A0A067L5S6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24357 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_114638_010 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Jatropha curcas]
2 Hb_001021_160 0.1959519157 - - PREDICTED: homeobox protein LUMINIDEPENDENS [Jatropha curcas]
3 Hb_001097_060 0.1967129387 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 8 [Jatropha curcas]
4 Hb_002447_020 0.201744148 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000853_260 0.2032236024 - - PREDICTED: probable galacturonosyltransferase-like 7 [Jatropha curcas]
6 Hb_162378_010 0.2035388361 - - hypothetical protein JCGZ_20480 [Jatropha curcas]
7 Hb_009189_020 0.2035534425 - - PREDICTED: CASP-like protein 4B4 [Jatropha curcas]
8 Hb_186857_010 0.2039977239 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
9 Hb_003449_060 0.2054508226 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
10 Hb_004374_130 0.2055764312 - - PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]
11 Hb_008511_060 0.2113239268 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
12 Hb_002092_110 0.2128050836 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
13 Hb_002475_120 0.2162227645 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
14 Hb_001269_310 0.2216600679 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
15 Hb_154114_030 0.2223074701 - - amino acid binding protein, putative [Ricinus communis]
16 Hb_000544_180 0.2234890222 - - PREDICTED: probable auxin efflux carrier component 1c isoform X1 [Jatropha curcas]
17 Hb_000453_040 0.2257685276 - - Triosephosphate isomerase, cytosolic [Gossypium arboreum]
18 Hb_004223_110 0.2277859751 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]
19 Hb_001882_110 0.2282813353 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
20 Hb_003177_010 0.2300215916 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]

Gene co-expression network

sample Hb_114638_010 Hb_114638_010 Hb_001021_160 Hb_001021_160 Hb_114638_010--Hb_001021_160 Hb_001097_060 Hb_001097_060 Hb_114638_010--Hb_001097_060 Hb_002447_020 Hb_002447_020 Hb_114638_010--Hb_002447_020 Hb_000853_260 Hb_000853_260 Hb_114638_010--Hb_000853_260 Hb_162378_010 Hb_162378_010 Hb_114638_010--Hb_162378_010 Hb_009189_020 Hb_009189_020 Hb_114638_010--Hb_009189_020 Hb_000453_040 Hb_000453_040 Hb_001021_160--Hb_000453_040 Hb_003861_070 Hb_003861_070 Hb_001021_160--Hb_003861_070 Hb_000287_050 Hb_000287_050 Hb_001021_160--Hb_000287_050 Hb_008511_060 Hb_008511_060 Hb_001021_160--Hb_008511_060 Hb_011249_030 Hb_011249_030 Hb_001021_160--Hb_011249_030 Hb_028207_020 Hb_028207_020 Hb_001021_160--Hb_028207_020 Hb_001097_060--Hb_162378_010 Hb_000556_150 Hb_000556_150 Hb_001097_060--Hb_000556_150 Hb_105427_010 Hb_105427_010 Hb_001097_060--Hb_105427_010 Hb_007919_080 Hb_007919_080 Hb_001097_060--Hb_007919_080 Hb_003371_060 Hb_003371_060 Hb_001097_060--Hb_003371_060 Hb_002447_020--Hb_001097_060 Hb_154114_030 Hb_154114_030 Hb_002447_020--Hb_154114_030 Hb_003449_060 Hb_003449_060 Hb_002447_020--Hb_003449_060 Hb_003740_010 Hb_003740_010 Hb_002447_020--Hb_003740_010 Hb_003494_010 Hb_003494_010 Hb_002447_020--Hb_003494_010 Hb_000207_190 Hb_000207_190 Hb_000853_260--Hb_000207_190 Hb_000392_370 Hb_000392_370 Hb_000853_260--Hb_000392_370 Hb_001584_370 Hb_001584_370 Hb_000853_260--Hb_001584_370 Hb_000853_260--Hb_000556_150 Hb_003430_090 Hb_003430_090 Hb_000853_260--Hb_003430_090 Hb_002092_110 Hb_002092_110 Hb_000853_260--Hb_002092_110 Hb_003858_040 Hb_003858_040 Hb_162378_010--Hb_003858_040 Hb_000002_490 Hb_000002_490 Hb_162378_010--Hb_000002_490 Hb_001050_010 Hb_001050_010 Hb_162378_010--Hb_001050_010 Hb_162378_010--Hb_000556_150 Hb_000480_010 Hb_000480_010 Hb_162378_010--Hb_000480_010 Hb_162378_010--Hb_000392_370 Hb_004374_130 Hb_004374_130 Hb_009189_020--Hb_004374_130 Hb_004466_040 Hb_004466_040 Hb_009189_020--Hb_004466_040 Hb_083628_010 Hb_083628_010 Hb_009189_020--Hb_083628_010 Hb_086022_010 Hb_086022_010 Hb_009189_020--Hb_086022_010 Hb_009222_070 Hb_009222_070 Hb_009189_020--Hb_009222_070 Hb_000608_110 Hb_000608_110 Hb_009189_020--Hb_000608_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.10977 0.355966 1.25511 1.46885 1.75001 0.218658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.24404 0.191907 0.0873653 0.135594 0.291025

CAGE analysis