Hb_001021_160

Information

Type -
Description -
Location Contig1021: 173696-182990
Sequence    

Annotation

kegg
ID rcu:RCOM_0555290
description Homeobox protein LUMINIDEPENDENS, putative
nr
ID XP_012082704.1
description PREDICTED: homeobox protein LUMINIDEPENDENS [Jatropha curcas]
swissprot
ID Q38796
description Homeobox protein LUMINIDEPENDENS OS=Arabidopsis thaliana GN=LD PE=1 SV=2
trembl
ID A0A067JW28
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13878 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00987: 180421-180675 , PASA_asmbl_00988: 182184-182992
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001021_160 0.0 - - PREDICTED: homeobox protein LUMINIDEPENDENS [Jatropha curcas]
2 Hb_000453_040 0.1225137965 - - Triosephosphate isomerase, cytosolic [Gossypium arboreum]
3 Hb_003861_070 0.1271374034 - - PREDICTED: uncharacterized protein LOC105650781 [Jatropha curcas]
4 Hb_000287_050 0.1295920384 - - PREDICTED: uncharacterized protein LOC105637398 [Jatropha curcas]
5 Hb_008511_060 0.1323314835 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
6 Hb_011249_030 0.142877232 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
7 Hb_028207_020 0.1496632911 - - PREDICTED: uncharacterized protein LOC105650315 isoform X2 [Jatropha curcas]
8 Hb_004223_110 0.1505266869 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]
9 Hb_001195_120 0.150678702 - - oxidoreductase, putative [Ricinus communis]
10 Hb_065755_030 0.1548976013 - - -
11 Hb_000983_120 0.1558733932 - - cyclin-dependent protein kinase, putative [Ricinus communis]
12 Hb_008921_010 0.1559731062 - - PREDICTED: uncharacterized protein LOC105629323 [Jatropha curcas]
13 Hb_039605_010 0.1561910114 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
14 Hb_001105_050 0.156696655 - - PREDICTED: uncharacterized protein LOC105642744 isoform X1 [Jatropha curcas]
15 Hb_000122_010 0.1591699498 - - amino acid transporter, putative [Ricinus communis]
16 Hb_002870_020 0.1602985353 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X1 [Jatropha curcas]
17 Hb_143766_020 0.1604536223 - - putative phospholipase A2 [Gossypium arboreum]
18 Hb_003994_140 0.1606473778 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000165_140 0.1608550752 - - PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 isoform X2 [Populus euphratica]
20 Hb_000599_080 0.1609350756 - - PREDICTED: TOM1-like protein 1 [Malus domestica]

Gene co-expression network

sample Hb_001021_160 Hb_001021_160 Hb_000453_040 Hb_000453_040 Hb_001021_160--Hb_000453_040 Hb_003861_070 Hb_003861_070 Hb_001021_160--Hb_003861_070 Hb_000287_050 Hb_000287_050 Hb_001021_160--Hb_000287_050 Hb_008511_060 Hb_008511_060 Hb_001021_160--Hb_008511_060 Hb_011249_030 Hb_011249_030 Hb_001021_160--Hb_011249_030 Hb_028207_020 Hb_028207_020 Hb_001021_160--Hb_028207_020 Hb_003994_140 Hb_003994_140 Hb_000453_040--Hb_003994_140 Hb_002232_190 Hb_002232_190 Hb_000453_040--Hb_002232_190 Hb_002042_030 Hb_002042_030 Hb_000453_040--Hb_002042_030 Hb_000608_350 Hb_000608_350 Hb_000453_040--Hb_000608_350 Hb_098315_070 Hb_098315_070 Hb_000453_040--Hb_098315_070 Hb_000138_130 Hb_000138_130 Hb_000453_040--Hb_000138_130 Hb_001328_030 Hb_001328_030 Hb_003861_070--Hb_001328_030 Hb_065755_030 Hb_065755_030 Hb_003861_070--Hb_065755_030 Hb_178968_140 Hb_178968_140 Hb_003861_070--Hb_178968_140 Hb_000390_310 Hb_000390_310 Hb_003861_070--Hb_000390_310 Hb_003861_070--Hb_000287_050 Hb_029142_030 Hb_029142_030 Hb_003861_070--Hb_029142_030 Hb_000287_050--Hb_011249_030 Hb_039605_010 Hb_039605_010 Hb_000287_050--Hb_039605_010 Hb_000139_190 Hb_000139_190 Hb_000287_050--Hb_000139_190 Hb_000287_050--Hb_065755_030 Hb_002928_010 Hb_002928_010 Hb_000287_050--Hb_002928_010 Hb_008921_010 Hb_008921_010 Hb_000287_050--Hb_008921_010 Hb_006831_070 Hb_006831_070 Hb_008511_060--Hb_006831_070 Hb_002217_380 Hb_002217_380 Hb_008511_060--Hb_002217_380 Hb_009393_200 Hb_009393_200 Hb_008511_060--Hb_009393_200 Hb_086022_010 Hb_086022_010 Hb_008511_060--Hb_086022_010 Hb_010053_040 Hb_010053_040 Hb_008511_060--Hb_010053_040 Hb_008511_060--Hb_000608_350 Hb_011249_030--Hb_039605_010 Hb_001277_280 Hb_001277_280 Hb_011249_030--Hb_001277_280 Hb_004128_200 Hb_004128_200 Hb_011249_030--Hb_004128_200 Hb_011249_030--Hb_029142_030 Hb_011249_030--Hb_065755_030 Hb_006326_050 Hb_006326_050 Hb_028207_020--Hb_006326_050 Hb_002255_040 Hb_002255_040 Hb_028207_020--Hb_002255_040 Hb_010367_030 Hb_010367_030 Hb_028207_020--Hb_010367_030 Hb_028207_020--Hb_065755_030 Hb_003581_210 Hb_003581_210 Hb_028207_020--Hb_003581_210 Hb_028207_020--Hb_011249_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.693328 0.428037 1.12187 0.6383 0.697933 0.39327
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.267703 0.153186 0.144969 0.0533621 0.323066

CAGE analysis