Hb_002232_190

Information

Type -
Description -
Location Contig2232: 144639-148754
Sequence    

Annotation

kegg
ID rcu:RCOM_1381640
description hypothetical protein
nr
ID XP_002522056.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9M2Y6
description Uncharacterized protein At3g49720 OS=Arabidopsis thaliana GN=At3g49720 PE=2 SV=1
trembl
ID B9S7U0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1381640 PE=4 SV=1
Gene Ontology
ID GO:0004553
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23117: 144687-148630
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002232_190 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011249_030 0.0936724816 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
3 Hb_000287_050 0.09586801 - - PREDICTED: uncharacterized protein LOC105637398 [Jatropha curcas]
4 Hb_000453_040 0.0970333573 - - Triosephosphate isomerase, cytosolic [Gossypium arboreum]
5 Hb_029142_030 0.1066348524 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
6 Hb_002042_030 0.1111200305 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
7 Hb_098315_070 0.1112612688 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105636030 isoform X1 [Jatropha curcas]
8 Hb_039605_010 0.1120391848 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
9 Hb_008921_010 0.1163809945 - - PREDICTED: uncharacterized protein LOC105629323 [Jatropha curcas]
10 Hb_004128_200 0.1180302939 - - PREDICTED: uncharacterized protein LOC105642137 [Jatropha curcas]
11 Hb_000077_010 0.1192359752 - - unnamed protein product [Vitis vinifera]
12 Hb_002928_010 0.1195696784 - - PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]
13 Hb_003994_140 0.1204027013 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001486_170 0.1227961424 - - PREDICTED: syntaxin-132 [Jatropha curcas]
15 Hb_000002_120 0.1232870984 - - PREDICTED: uncharacterized protein LOC105782064 [Gossypium raimondii]
16 Hb_003579_050 0.1238144985 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
17 Hb_000139_220 0.1242398687 - - leucine rich repeat-containing protein, putative [Ricinus communis]
18 Hb_012586_050 0.1257584857 - - PREDICTED: triosephosphate isomerase, cytosolic [Prunus mume]
19 Hb_000414_050 0.1281569991 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
20 Hb_000436_100 0.1297700193 - - PREDICTED: uncharacterized protein LOC105638514 [Jatropha curcas]

Gene co-expression network

sample Hb_002232_190 Hb_002232_190 Hb_011249_030 Hb_011249_030 Hb_002232_190--Hb_011249_030 Hb_000287_050 Hb_000287_050 Hb_002232_190--Hb_000287_050 Hb_000453_040 Hb_000453_040 Hb_002232_190--Hb_000453_040 Hb_029142_030 Hb_029142_030 Hb_002232_190--Hb_029142_030 Hb_002042_030 Hb_002042_030 Hb_002232_190--Hb_002042_030 Hb_098315_070 Hb_098315_070 Hb_002232_190--Hb_098315_070 Hb_011249_030--Hb_000287_050 Hb_039605_010 Hb_039605_010 Hb_011249_030--Hb_039605_010 Hb_001277_280 Hb_001277_280 Hb_011249_030--Hb_001277_280 Hb_004128_200 Hb_004128_200 Hb_011249_030--Hb_004128_200 Hb_011249_030--Hb_029142_030 Hb_065755_030 Hb_065755_030 Hb_011249_030--Hb_065755_030 Hb_000287_050--Hb_039605_010 Hb_000139_190 Hb_000139_190 Hb_000287_050--Hb_000139_190 Hb_000287_050--Hb_065755_030 Hb_002928_010 Hb_002928_010 Hb_000287_050--Hb_002928_010 Hb_008921_010 Hb_008921_010 Hb_000287_050--Hb_008921_010 Hb_003994_140 Hb_003994_140 Hb_000453_040--Hb_003994_140 Hb_000453_040--Hb_002042_030 Hb_000608_350 Hb_000608_350 Hb_000453_040--Hb_000608_350 Hb_000453_040--Hb_098315_070 Hb_000138_130 Hb_000138_130 Hb_000453_040--Hb_000138_130 Hb_005975_010 Hb_005975_010 Hb_029142_030--Hb_005975_010 Hb_000002_120 Hb_000002_120 Hb_029142_030--Hb_000002_120 Hb_002255_040 Hb_002255_040 Hb_029142_030--Hb_002255_040 Hb_000436_100 Hb_000436_100 Hb_029142_030--Hb_000436_100 Hb_000340_130 Hb_000340_130 Hb_029142_030--Hb_000340_130 Hb_000414_050 Hb_000414_050 Hb_002042_030--Hb_000414_050 Hb_000915_080 Hb_000915_080 Hb_002042_030--Hb_000915_080 Hb_001301_220 Hb_001301_220 Hb_002042_030--Hb_001301_220 Hb_000718_070 Hb_000718_070 Hb_002042_030--Hb_000718_070 Hb_001418_040 Hb_001418_040 Hb_002042_030--Hb_001418_040 Hb_027472_120 Hb_027472_120 Hb_002042_030--Hb_027472_120 Hb_098315_070--Hb_002042_030 Hb_098315_070--Hb_003994_140 Hb_000265_220 Hb_000265_220 Hb_098315_070--Hb_000265_220 Hb_002896_060 Hb_002896_060 Hb_098315_070--Hb_002896_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.8302 9.59828 33.964 9.7305 24.2381 13.6183
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.88685 8.99066 4.7038 6.80318 7.11522

CAGE analysis