Hb_098315_070

Information

Type transcription factor
Description TF Family: C2H2
Location Contig98315: 24389-27586
Sequence    

Annotation

kegg
ID rcu:RCOM_0818880
description hypothetical protein
nr
ID XP_012074596.1
description PREDICTED: uncharacterized protein LOC105636030 isoform X1 [Jatropha curcas]
swissprot
ID O64571
description UBP1-associated proteins 1C OS=Arabidopsis thaliana GN=UBA1C PE=3 SV=2
trembl
ID A0A067KVS8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09941 PE=4 SV=1
Gene Ontology
ID GO:0003676
description hva22 isoform 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64497: 25166-25647 , PASA_asmbl_64498: 25878-27565 , PASA_asmbl_64499: 25823-26305
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_098315_070 0.0 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105636030 isoform X1 [Jatropha curcas]
2 Hb_000453_040 0.1043938913 - - Triosephosphate isomerase, cytosolic [Gossypium arboreum]
3 Hb_002042_030 0.1092299732 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
4 Hb_002232_190 0.1112612688 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003994_140 0.1256953243 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000265_220 0.1268048707 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
7 Hb_002896_060 0.1316012697 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
8 Hb_000414_050 0.1329278043 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
9 Hb_000915_080 0.1378048971 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
10 Hb_025669_020 0.1382275469 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001195_260 0.1403235841 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
12 Hb_001486_170 0.1407198435 - - PREDICTED: syntaxin-132 [Jatropha curcas]
13 Hb_000718_070 0.1407265081 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005463_130 0.1412626741 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
15 Hb_002928_010 0.1414811243 - - PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]
16 Hb_027380_030 0.1427862522 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
17 Hb_001051_090 0.1436885804 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
18 Hb_002026_140 0.1439380838 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
19 Hb_000751_030 0.1446417317 - - Vesicle transport protein GOT1B, putative [Ricinus communis]
20 Hb_162378_010 0.145129952 - - hypothetical protein JCGZ_20480 [Jatropha curcas]

Gene co-expression network

sample Hb_098315_070 Hb_098315_070 Hb_000453_040 Hb_000453_040 Hb_098315_070--Hb_000453_040 Hb_002042_030 Hb_002042_030 Hb_098315_070--Hb_002042_030 Hb_002232_190 Hb_002232_190 Hb_098315_070--Hb_002232_190 Hb_003994_140 Hb_003994_140 Hb_098315_070--Hb_003994_140 Hb_000265_220 Hb_000265_220 Hb_098315_070--Hb_000265_220 Hb_002896_060 Hb_002896_060 Hb_098315_070--Hb_002896_060 Hb_000453_040--Hb_003994_140 Hb_000453_040--Hb_002232_190 Hb_000453_040--Hb_002042_030 Hb_000608_350 Hb_000608_350 Hb_000453_040--Hb_000608_350 Hb_000138_130 Hb_000138_130 Hb_000453_040--Hb_000138_130 Hb_000414_050 Hb_000414_050 Hb_002042_030--Hb_000414_050 Hb_000915_080 Hb_000915_080 Hb_002042_030--Hb_000915_080 Hb_001301_220 Hb_001301_220 Hb_002042_030--Hb_001301_220 Hb_000718_070 Hb_000718_070 Hb_002042_030--Hb_000718_070 Hb_001418_040 Hb_001418_040 Hb_002042_030--Hb_001418_040 Hb_027472_120 Hb_027472_120 Hb_002042_030--Hb_027472_120 Hb_011249_030 Hb_011249_030 Hb_002232_190--Hb_011249_030 Hb_000287_050 Hb_000287_050 Hb_002232_190--Hb_000287_050 Hb_029142_030 Hb_029142_030 Hb_002232_190--Hb_029142_030 Hb_002232_190--Hb_002042_030 Hb_002928_010 Hb_002928_010 Hb_003994_140--Hb_002928_010 Hb_039605_010 Hb_039605_010 Hb_003994_140--Hb_039605_010 Hb_000563_330 Hb_000563_330 Hb_003994_140--Hb_000563_330 Hb_000525_100 Hb_000525_100 Hb_003994_140--Hb_000525_100 Hb_000983_120 Hb_000983_120 Hb_003994_140--Hb_000983_120 Hb_003994_140--Hb_002042_030 Hb_000809_210 Hb_000809_210 Hb_000265_220--Hb_000809_210 Hb_000265_220--Hb_002896_060 Hb_027380_030 Hb_027380_030 Hb_000265_220--Hb_027380_030 Hb_011915_010 Hb_011915_010 Hb_000265_220--Hb_011915_010 Hb_000453_140 Hb_000453_140 Hb_000265_220--Hb_000453_140 Hb_002681_170 Hb_002681_170 Hb_000265_220--Hb_002681_170 Hb_001051_090 Hb_001051_090 Hb_002896_060--Hb_001051_090 Hb_002896_060--Hb_027380_030 Hb_002092_100 Hb_002092_100 Hb_002896_060--Hb_002092_100 Hb_002896_060--Hb_000453_140 Hb_001952_120 Hb_001952_120 Hb_002896_060--Hb_001952_120 Hb_002805_060 Hb_002805_060 Hb_002896_060--Hb_002805_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.4624 12.1298 37.0737 19.5981 48.7641 22.0233
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1016 14.677 9.226 6.23705 8.0475

CAGE analysis