Hb_003861_070

Information

Type -
Description -
Location Contig3861: 67679-69550
Sequence    

Annotation

kegg
ID rcu:RCOM_0175940
description hypothetical protein
nr
ID XP_012093123.1
description PREDICTED: uncharacterized protein LOC105650781 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L7V2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16330 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38838: 67741-68973 , PASA_asmbl_38839: 69052-69218
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003861_070 0.0 - - PREDICTED: uncharacterized protein LOC105650781 [Jatropha curcas]
2 Hb_001328_030 0.0925757323 - - PREDICTED: nucleobase-ascorbate transporter 1 [Jatropha curcas]
3 Hb_065755_030 0.0995223954 - - -
4 Hb_178968_140 0.1207006535 - - PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_000390_310 0.1225306691 - - PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]
6 Hb_000287_050 0.1244520131 - - PREDICTED: uncharacterized protein LOC105637398 [Jatropha curcas]
7 Hb_029142_030 0.1258481193 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
8 Hb_001021_160 0.1271374034 - - PREDICTED: homeobox protein LUMINIDEPENDENS [Jatropha curcas]
9 Hb_000175_590 0.1286557792 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
10 Hb_010367_030 0.1286766605 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007313_090 0.1295171645 - - conserved hypothetical protein [Ricinus communis]
12 Hb_011249_030 0.1308336772 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
13 Hb_001699_210 0.1310684137 - - PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 isoform X1 [Jatropha curcas]
14 Hb_028207_020 0.1329169238 - - PREDICTED: uncharacterized protein LOC105650315 isoform X2 [Jatropha curcas]
15 Hb_000300_670 0.1329230736 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
16 Hb_000576_050 0.1332224031 - - Kinase superfamily protein [Theobroma cacao]
17 Hb_001839_020 0.1348771672 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
18 Hb_000436_100 0.1357755026 - - PREDICTED: uncharacterized protein LOC105638514 [Jatropha curcas]
19 Hb_000243_160 0.1359358833 - - glutaredoxin-1, grx1, putative [Ricinus communis]
20 Hb_005433_010 0.136159506 - - PREDICTED: 66 kDa stress protein-like [Jatropha curcas]

Gene co-expression network

sample Hb_003861_070 Hb_003861_070 Hb_001328_030 Hb_001328_030 Hb_003861_070--Hb_001328_030 Hb_065755_030 Hb_065755_030 Hb_003861_070--Hb_065755_030 Hb_178968_140 Hb_178968_140 Hb_003861_070--Hb_178968_140 Hb_000390_310 Hb_000390_310 Hb_003861_070--Hb_000390_310 Hb_000287_050 Hb_000287_050 Hb_003861_070--Hb_000287_050 Hb_029142_030 Hb_029142_030 Hb_003861_070--Hb_029142_030 Hb_001328_030--Hb_065755_030 Hb_001328_030--Hb_178968_140 Hb_005731_110 Hb_005731_110 Hb_001328_030--Hb_005731_110 Hb_010367_030 Hb_010367_030 Hb_001328_030--Hb_010367_030 Hb_000105_050 Hb_000105_050 Hb_001328_030--Hb_000105_050 Hb_065755_030--Hb_178968_140 Hb_003760_030 Hb_003760_030 Hb_065755_030--Hb_003760_030 Hb_065755_030--Hb_005731_110 Hb_000959_220 Hb_000959_220 Hb_065755_030--Hb_000959_220 Hb_001776_060 Hb_001776_060 Hb_065755_030--Hb_001776_060 Hb_000663_020 Hb_000663_020 Hb_178968_140--Hb_000663_020 Hb_178968_140--Hb_005731_110 Hb_001541_050 Hb_001541_050 Hb_178968_140--Hb_001541_050 Hb_000640_160 Hb_000640_160 Hb_178968_140--Hb_000640_160 Hb_000948_180 Hb_000948_180 Hb_000390_310--Hb_000948_180 Hb_032202_230 Hb_032202_230 Hb_000390_310--Hb_032202_230 Hb_004951_070 Hb_004951_070 Hb_000390_310--Hb_004951_070 Hb_000175_590 Hb_000175_590 Hb_000390_310--Hb_000175_590 Hb_001652_080 Hb_001652_080 Hb_000390_310--Hb_001652_080 Hb_001213_130 Hb_001213_130 Hb_000390_310--Hb_001213_130 Hb_011249_030 Hb_011249_030 Hb_000287_050--Hb_011249_030 Hb_039605_010 Hb_039605_010 Hb_000287_050--Hb_039605_010 Hb_000139_190 Hb_000139_190 Hb_000287_050--Hb_000139_190 Hb_000287_050--Hb_065755_030 Hb_002928_010 Hb_002928_010 Hb_000287_050--Hb_002928_010 Hb_008921_010 Hb_008921_010 Hb_000287_050--Hb_008921_010 Hb_005975_010 Hb_005975_010 Hb_029142_030--Hb_005975_010 Hb_029142_030--Hb_011249_030 Hb_000002_120 Hb_000002_120 Hb_029142_030--Hb_000002_120 Hb_002255_040 Hb_002255_040 Hb_029142_030--Hb_002255_040 Hb_000436_100 Hb_000436_100 Hb_029142_030--Hb_000436_100 Hb_000340_130 Hb_000340_130 Hb_029142_030--Hb_000340_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.5039 12.7103 39.3946 17.6745 27.5018 15.6449
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.1203 14.503 5.67519 3.36166 17.6876

CAGE analysis