Hb_001541_050

Information

Type -
Description -
Location Contig1541: 53497-57830
Sequence    

Annotation

kegg
ID rcu:RCOM_0794270
description afc, putative (EC:2.7.12.1)
nr
ID XP_012085505.1
description PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]
swissprot
ID P51567
description Serine/threonine-protein kinase AFC2 OS=Arabidopsis thaliana GN=AFC2 PE=1 SV=1
trembl
ID A0A067JRU4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17834 PE=4 SV=1
Gene Ontology
ID GO:0004712
description serine threonine-protein kinase afc2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13267: 55435-56652 , PASA_asmbl_13268: 55435-57796
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001541_050 0.0 - - PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]
2 Hb_065525_080 0.078145057 - - PREDICTED: ubiquitin-conjugating enzyme E2 14 [Populus euphratica]
3 Hb_005494_010 0.0851103295 - - catalytic, putative [Ricinus communis]
4 Hb_093666_010 0.0863609174 - - BnaC05g06620D [Brassica napus]
5 Hb_004096_240 0.0893205063 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
6 Hb_001623_270 0.0895185725 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
7 Hb_002876_300 0.091258563 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
8 Hb_113853_010 0.0913946378 - - 50S ribosomal protein L2, putative [Ricinus communis]
9 Hb_000120_210 0.0916802561 - - PREDICTED: uncharacterized protein LOC105630189 [Jatropha curcas]
10 Hb_178968_140 0.0927184309 - - PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_001935_100 0.0936977258 - - structural molecule, putative [Ricinus communis]
12 Hb_004994_120 0.0968815528 - - PREDICTED: acyl-coenzyme A thioesterase 13-like isoform X1 [Jatropha curcas]
13 Hb_003752_070 0.0979609342 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
14 Hb_030414_040 0.1004473063 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
15 Hb_000051_060 0.1011416556 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000663_020 0.1020239324 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
17 Hb_000375_390 0.1022562689 - - poly-A binding protein, putative [Ricinus communis]
18 Hb_000003_170 0.1023845031 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
19 Hb_005946_040 0.1047030314 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
20 Hb_021374_030 0.1050910283 - - hypothetical protein RCOM_0351490 [Ricinus communis]

Gene co-expression network

sample Hb_001541_050 Hb_001541_050 Hb_065525_080 Hb_065525_080 Hb_001541_050--Hb_065525_080 Hb_005494_010 Hb_005494_010 Hb_001541_050--Hb_005494_010 Hb_093666_010 Hb_093666_010 Hb_001541_050--Hb_093666_010 Hb_004096_240 Hb_004096_240 Hb_001541_050--Hb_004096_240 Hb_001623_270 Hb_001623_270 Hb_001541_050--Hb_001623_270 Hb_002876_300 Hb_002876_300 Hb_001541_050--Hb_002876_300 Hb_065525_080--Hb_093666_010 Hb_001221_440 Hb_001221_440 Hb_065525_080--Hb_001221_440 Hb_113853_010 Hb_113853_010 Hb_065525_080--Hb_113853_010 Hb_065525_080--Hb_001623_270 Hb_000375_390 Hb_000375_390 Hb_065525_080--Hb_000375_390 Hb_183433_010 Hb_183433_010 Hb_065525_080--Hb_183433_010 Hb_005494_010--Hb_113853_010 Hb_005494_010--Hb_001623_270 Hb_005946_040 Hb_005946_040 Hb_005494_010--Hb_005946_040 Hb_000304_070 Hb_000304_070 Hb_005494_010--Hb_000304_070 Hb_001109_050 Hb_001109_050 Hb_005494_010--Hb_001109_050 Hb_000227_170 Hb_000227_170 Hb_005494_010--Hb_000227_170 Hb_093666_010--Hb_113853_010 Hb_030414_040 Hb_030414_040 Hb_093666_010--Hb_030414_040 Hb_093666_010--Hb_001623_270 Hb_021374_030 Hb_021374_030 Hb_093666_010--Hb_021374_030 Hb_093666_010--Hb_183433_010 Hb_000120_210 Hb_000120_210 Hb_004096_240--Hb_000120_210 Hb_004096_240--Hb_030414_040 Hb_031284_010 Hb_031284_010 Hb_004096_240--Hb_031284_010 Hb_004096_240--Hb_000375_390 Hb_021943_080 Hb_021943_080 Hb_004096_240--Hb_021943_080 Hb_003186_020 Hb_003186_020 Hb_004096_240--Hb_003186_020 Hb_000176_020 Hb_000176_020 Hb_001623_270--Hb_000176_020 Hb_001623_270--Hb_183433_010 Hb_000789_320 Hb_000789_320 Hb_001623_270--Hb_000789_320 Hb_171900_090 Hb_171900_090 Hb_001623_270--Hb_171900_090 Hb_014834_150 Hb_014834_150 Hb_001623_270--Hb_014834_150 Hb_000230_400 Hb_000230_400 Hb_001623_270--Hb_000230_400 Hb_002876_300--Hb_030414_040 Hb_000826_030 Hb_000826_030 Hb_002876_300--Hb_000826_030 Hb_000035_090 Hb_000035_090 Hb_002876_300--Hb_000035_090 Hb_002876_300--Hb_005946_040 Hb_002876_300--Hb_113853_010 Hb_012438_030 Hb_012438_030 Hb_002876_300--Hb_012438_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.80887 6.29719 14.2315 8.25663 5.72744 6.7725
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.01177 9.70781 2.53588 4.50125 13.3431

CAGE analysis