Hb_002217_380

Information

Type -
Description -
Location Contig2217: 321840-324352
Sequence    

Annotation

kegg
ID rcu:RCOM_1001330
description hypothetical protein
nr
ID XP_012084113.1
description PREDICTED: uncharacterized protein LOC105643567 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JVN1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19027 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22945: 322132-323383 , PASA_asmbl_22946: 322211-323015 , PASA_asmbl_22947: 322515-323383 , PASA_asmbl_22948: 323460-324339
cDNA
(Sanger)
(ID:Location)		 029_O03.ab1: 323460-324339

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_380 0.0 - - PREDICTED: uncharacterized protein LOC105643567 [Jatropha curcas]
2 Hb_086022_010 0.058821362 - - PREDICTED: succinate dehydrogenase assembly factor 1 homolog, mitochondrial [Nicotiana tomentosiformis]
3 Hb_008511_060 0.1190361977 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
4 Hb_000556_150 0.126318871 - - PREDICTED: fasciclin-like arabinogalactan protein 10 [Populus euphratica]
5 Hb_000608_110 0.139010553 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 [Jatropha curcas]
6 Hb_007919_080 0.1397726984 - - PREDICTED: uncharacterized protein At1g76660 isoform X1 [Jatropha curcas]
7 Hb_076874_010 0.14005225 - - PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]
8 Hb_007951_040 0.1405899914 - - signal peptidase family protein [Populus trichocarpa]
9 Hb_010053_040 0.1420569041 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
10 Hb_004466_040 0.1478242277 - - PREDICTED: protein RER1B-like [Gossypium raimondii]
11 Hb_003925_070 0.1496466051 - - ATOZI1, putative [Ricinus communis]
12 Hb_000453_040 0.1511971128 - - Triosephosphate isomerase, cytosolic [Gossypium arboreum]
13 Hb_000544_180 0.1521690754 - - PREDICTED: probable auxin efflux carrier component 1c isoform X1 [Jatropha curcas]
14 Hb_002485_030 0.1538779852 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
15 Hb_009393_200 0.1546986254 - - PREDICTED: F-box only protein 13 [Jatropha curcas]
16 Hb_001085_260 0.1575861137 - - PREDICTED: uncharacterized protein LOC105633184 [Jatropha curcas]
17 Hb_002960_150 0.1622599814 - - hypothetical protein CISIN_1g029215mg [Citrus sinensis]
18 Hb_000122_010 0.1650399438 - - amino acid transporter, putative [Ricinus communis]
19 Hb_024836_010 0.1654830269 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
20 Hb_070469_010 0.1656237789 - - hypothetical protein POPTR_0002s21850g [Populus trichocarpa]

Gene co-expression network

sample Hb_002217_380 Hb_002217_380 Hb_086022_010 Hb_086022_010 Hb_002217_380--Hb_086022_010 Hb_008511_060 Hb_008511_060 Hb_002217_380--Hb_008511_060 Hb_000556_150 Hb_000556_150 Hb_002217_380--Hb_000556_150 Hb_000608_110 Hb_000608_110 Hb_002217_380--Hb_000608_110 Hb_007919_080 Hb_007919_080 Hb_002217_380--Hb_007919_080 Hb_076874_010 Hb_076874_010 Hb_002217_380--Hb_076874_010 Hb_004466_040 Hb_004466_040 Hb_086022_010--Hb_004466_040 Hb_086022_010--Hb_000608_110 Hb_086022_010--Hb_000556_150 Hb_086022_010--Hb_008511_060 Hb_007951_040 Hb_007951_040 Hb_086022_010--Hb_007951_040 Hb_006831_070 Hb_006831_070 Hb_008511_060--Hb_006831_070 Hb_009393_200 Hb_009393_200 Hb_008511_060--Hb_009393_200 Hb_010053_040 Hb_010053_040 Hb_008511_060--Hb_010053_040 Hb_000608_350 Hb_000608_350 Hb_008511_060--Hb_000608_350 Hb_000392_370 Hb_000392_370 Hb_000556_150--Hb_000392_370 Hb_005463_130 Hb_005463_130 Hb_000556_150--Hb_005463_130 Hb_000556_150--Hb_007919_080 Hb_001501_080 Hb_001501_080 Hb_000556_150--Hb_001501_080 Hb_007904_210 Hb_007904_210 Hb_000556_150--Hb_007904_210 Hb_000608_110--Hb_001501_080 Hb_000751_030 Hb_000751_030 Hb_000608_110--Hb_000751_030 Hb_000494_080 Hb_000494_080 Hb_000608_110--Hb_000494_080 Hb_000608_110--Hb_007951_040 Hb_000760_020 Hb_000760_020 Hb_000608_110--Hb_000760_020 Hb_000096_120 Hb_000096_120 Hb_000608_110--Hb_000096_120 Hb_000416_050 Hb_000416_050 Hb_007919_080--Hb_000416_050 Hb_001486_170 Hb_001486_170 Hb_007919_080--Hb_001486_170 Hb_002836_140 Hb_002836_140 Hb_007919_080--Hb_002836_140 Hb_000022_200 Hb_000022_200 Hb_007919_080--Hb_000022_200 Hb_002900_080 Hb_002900_080 Hb_007919_080--Hb_002900_080 Hb_000025_050 Hb_000025_050 Hb_076874_010--Hb_000025_050 Hb_003925_070 Hb_003925_070 Hb_076874_010--Hb_003925_070 Hb_106411_010 Hb_106411_010 Hb_076874_010--Hb_106411_010 Hb_076874_010--Hb_000608_110 Hb_002530_010 Hb_002530_010 Hb_076874_010--Hb_002530_010 Hb_076874_010--Hb_086022_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.3903 9.84248 43.4637 53.224 30.3117 35.2992
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.4227 10.9683 10.5689 5.63608 7.11841

CAGE analysis