Hb_008511_060

Information

Type -
Description -
Location Contig8511: 58589-62490
Sequence    

Annotation

kegg
ID cic:CICLE_v10028348mg
description hypothetical protein
nr
ID XP_012069940.1
description PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
swissprot
ID Q6NKZ9
description Probable receptor-like serine/threonine-protein kinase At4g34500 OS=Arabidopsis thaliana GN=At4g34500 PE=2 SV=1
trembl
ID A0A067LG41
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10088 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable receptor-like serine threonine-protein kinase at4g34500

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60418: 58477-62487
cDNA
(Sanger)
(ID:Location)		 023_M15.ab1: 61900-62487

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008511_060 0.0 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
2 Hb_006831_070 0.1097187451 - - PREDICTED: probable galacturonosyltransferase 4 isoform X2 [Jatropha curcas]
3 Hb_002217_380 0.1190361977 - - PREDICTED: uncharacterized protein LOC105643567 [Jatropha curcas]
4 Hb_009393_200 0.1195636579 - - PREDICTED: F-box only protein 13 [Jatropha curcas]
5 Hb_086022_010 0.1199258269 - - PREDICTED: succinate dehydrogenase assembly factor 1 homolog, mitochondrial [Nicotiana tomentosiformis]
6 Hb_010053_040 0.1253223911 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
7 Hb_000608_350 0.1275877027 - - PREDICTED: ER membrane protein complex subunit 10 [Jatropha curcas]
8 Hb_000122_010 0.1277065327 - - amino acid transporter, putative [Ricinus communis]
9 Hb_000453_040 0.1302357605 - - Triosephosphate isomerase, cytosolic [Gossypium arboreum]
10 Hb_000579_060 0.1316744568 - - PREDICTED: uncharacterized protein LOC105633849 isoform X1 [Jatropha curcas]
11 Hb_001021_160 0.1323314835 - - PREDICTED: homeobox protein LUMINIDEPENDENS [Jatropha curcas]
12 Hb_048476_150 0.1362597406 - - PREDICTED: microtubule-associated protein 70-2-like isoform X1 [Jatropha curcas]
13 Hb_006816_330 0.137924494 - - exonuclease, putative [Ricinus communis]
14 Hb_001486_170 0.1384321863 - - PREDICTED: syntaxin-132 [Jatropha curcas]
15 Hb_009222_070 0.1406465024 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
16 Hb_002485_030 0.1428812606 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
17 Hb_007919_080 0.1435639785 - - PREDICTED: uncharacterized protein At1g76660 isoform X1 [Jatropha curcas]
18 Hb_013726_080 0.1449042593 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
19 Hb_002805_060 0.1449948121 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
20 Hb_000270_870 0.1458439627 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]

Gene co-expression network

sample Hb_008511_060 Hb_008511_060 Hb_006831_070 Hb_006831_070 Hb_008511_060--Hb_006831_070 Hb_002217_380 Hb_002217_380 Hb_008511_060--Hb_002217_380 Hb_009393_200 Hb_009393_200 Hb_008511_060--Hb_009393_200 Hb_086022_010 Hb_086022_010 Hb_008511_060--Hb_086022_010 Hb_010053_040 Hb_010053_040 Hb_008511_060--Hb_010053_040 Hb_000608_350 Hb_000608_350 Hb_008511_060--Hb_000608_350 Hb_000579_060 Hb_000579_060 Hb_006831_070--Hb_000579_060 Hb_006831_070--Hb_000608_350 Hb_000599_170 Hb_000599_170 Hb_006831_070--Hb_000599_170 Hb_003894_040 Hb_003894_040 Hb_006831_070--Hb_003894_040 Hb_007380_140 Hb_007380_140 Hb_006831_070--Hb_007380_140 Hb_002217_380--Hb_086022_010 Hb_000556_150 Hb_000556_150 Hb_002217_380--Hb_000556_150 Hb_000608_110 Hb_000608_110 Hb_002217_380--Hb_000608_110 Hb_007919_080 Hb_007919_080 Hb_002217_380--Hb_007919_080 Hb_076874_010 Hb_076874_010 Hb_002217_380--Hb_076874_010 Hb_000122_010 Hb_000122_010 Hb_009393_200--Hb_000122_010 Hb_009222_070 Hb_009222_070 Hb_009393_200--Hb_009222_070 Hb_009393_200--Hb_010053_040 Hb_004374_130 Hb_004374_130 Hb_009393_200--Hb_004374_130 Hb_000637_140 Hb_000637_140 Hb_009393_200--Hb_000637_140 Hb_004466_040 Hb_004466_040 Hb_086022_010--Hb_004466_040 Hb_086022_010--Hb_000608_110 Hb_086022_010--Hb_000556_150 Hb_007951_040 Hb_007951_040 Hb_086022_010--Hb_007951_040 Hb_002965_040 Hb_002965_040 Hb_010053_040--Hb_002965_040 Hb_000735_050 Hb_000735_050 Hb_010053_040--Hb_000735_050 Hb_005000_320 Hb_005000_320 Hb_010053_040--Hb_005000_320 Hb_010053_040--Hb_000637_140 Hb_003038_120 Hb_003038_120 Hb_010053_040--Hb_003038_120 Hb_003891_070 Hb_003891_070 Hb_010053_040--Hb_003891_070 Hb_007800_020 Hb_007800_020 Hb_000608_350--Hb_007800_020 Hb_000608_350--Hb_000637_140 Hb_007163_060 Hb_007163_060 Hb_000608_350--Hb_007163_060 Hb_005322_050 Hb_005322_050 Hb_000608_350--Hb_005322_050 Hb_004223_110 Hb_004223_110 Hb_000608_350--Hb_004223_110 Hb_005723_020 Hb_005723_020 Hb_000608_350--Hb_005723_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.3088 5.87148 18.0767 15.7146 11.0194 10.8611
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.40983 2.17256 3.02546 3.28766 4.61938

CAGE analysis