Hb_007380_140

Information

Type -
Description -
Location Contig7380: 155362-159689
Sequence    

Annotation

kegg
ID rcu:RCOM_0820390
description Glycosyltransferase QUASIMODO1, putative
nr
ID XP_012082219.1
description PREDICTED: probable galacturonosyltransferase 4 isoform X2 [Jatropha curcas]
swissprot
ID Q93ZX7
description Probable galacturonosyltransferase 4 OS=Arabidopsis thaliana GN=GAUT4 PE=2 SV=1
trembl
ID A0A067KB27
description Hexosyltransferase OS=Jatropha curcas GN=JCGZ_16418 PE=3 SV=1
Gene Ontology
ID GO:0000139
description probable galacturonosyltransferase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56249: 156011-159615
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007380_140 0.0 - - PREDICTED: probable galacturonosyltransferase 4 isoform X2 [Jatropha curcas]
2 Hb_142218_020 0.0777379977 - - actin family protein [Populus trichocarpa]
3 Hb_002686_040 0.0882655633 - - PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]
4 Hb_005723_020 0.0887528783 - - conserved hypothetical protein [Ricinus communis]
5 Hb_010272_010 0.0896490279 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
6 Hb_005946_210 0.0915326453 - - hypothetical protein JCGZ_07228 [Jatropha curcas]
7 Hb_158604_010 0.0917693148 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
8 Hb_001638_300 0.0987964849 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 4 [Jatropha curcas]
9 Hb_000933_010 0.0989904567 - - -
10 Hb_116349_070 0.1000718197 - - hypothetical protein JCGZ_21753 [Jatropha curcas]
11 Hb_000718_070 0.1012855057 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001135_120 0.1022530844 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
13 Hb_004129_070 0.1027079995 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]
14 Hb_002311_070 0.1030281217 - - PREDICTED: AMSH-like ubiquitin thioesterase 3 [Jatropha curcas]
15 Hb_006615_120 0.1034060483 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
16 Hb_000103_310 0.1035597491 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
17 Hb_000007_280 0.1049526253 - - hypothetical protein VITISV_000066 [Vitis vinifera]
18 Hb_000162_280 0.1050968721 - - PREDICTED: CTL-like protein DDB_G0288717 [Populus euphratica]
19 Hb_000317_510 0.106014975 - - PREDICTED: long chain base biosynthesis protein 1 [Jatropha curcas]
20 Hb_103747_020 0.1065563171 - - calcium dependent protein kinase, partial [Hevea brasiliensis]

Gene co-expression network

sample Hb_007380_140 Hb_007380_140 Hb_142218_020 Hb_142218_020 Hb_007380_140--Hb_142218_020 Hb_002686_040 Hb_002686_040 Hb_007380_140--Hb_002686_040 Hb_005723_020 Hb_005723_020 Hb_007380_140--Hb_005723_020 Hb_010272_010 Hb_010272_010 Hb_007380_140--Hb_010272_010 Hb_005946_210 Hb_005946_210 Hb_007380_140--Hb_005946_210 Hb_158604_010 Hb_158604_010 Hb_007380_140--Hb_158604_010 Hb_009083_070 Hb_009083_070 Hb_142218_020--Hb_009083_070 Hb_142218_020--Hb_002686_040 Hb_005137_040 Hb_005137_040 Hb_142218_020--Hb_005137_040 Hb_005918_010 Hb_005918_010 Hb_142218_020--Hb_005918_010 Hb_004129_070 Hb_004129_070 Hb_142218_020--Hb_004129_070 Hb_103747_020 Hb_103747_020 Hb_002686_040--Hb_103747_020 Hb_006618_090 Hb_006618_090 Hb_002686_040--Hb_006618_090 Hb_002686_040--Hb_005723_020 Hb_000174_060 Hb_000174_060 Hb_002686_040--Hb_000174_060 Hb_007894_160 Hb_007894_160 Hb_002686_040--Hb_007894_160 Hb_000398_080 Hb_000398_080 Hb_002686_040--Hb_000398_080 Hb_005723_020--Hb_103747_020 Hb_008226_090 Hb_008226_090 Hb_005723_020--Hb_008226_090 Hb_001135_120 Hb_001135_120 Hb_005723_020--Hb_001135_120 Hb_027654_020 Hb_027654_020 Hb_005723_020--Hb_027654_020 Hb_000933_010 Hb_000933_010 Hb_005723_020--Hb_000933_010 Hb_010272_010--Hb_005946_210 Hb_012215_010 Hb_012215_010 Hb_010272_010--Hb_012215_010 Hb_002539_110 Hb_002539_110 Hb_010272_010--Hb_002539_110 Hb_000640_070 Hb_000640_070 Hb_010272_010--Hb_000640_070 Hb_000664_110 Hb_000664_110 Hb_010272_010--Hb_000664_110 Hb_002014_040 Hb_002014_040 Hb_010272_010--Hb_002014_040 Hb_005946_210--Hb_000664_110 Hb_001109_060 Hb_001109_060 Hb_005946_210--Hb_001109_060 Hb_005946_210--Hb_008226_090 Hb_005946_210--Hb_012215_010 Hb_005946_210--Hb_002539_110 Hb_032920_130 Hb_032920_130 Hb_158604_010--Hb_032920_130 Hb_105641_010 Hb_105641_010 Hb_158604_010--Hb_105641_010 Hb_000115_160 Hb_000115_160 Hb_158604_010--Hb_000115_160 Hb_000483_380 Hb_000483_380 Hb_158604_010--Hb_000483_380 Hb_008112_030 Hb_008112_030 Hb_158604_010--Hb_008112_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.2354 17.8413 20.1208 23.7385 27.3668 21.2349
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.03791 6.82991 13.7036 17.1057 9.64717

CAGE analysis