Hb_000115_160

Information

Type -
Description -
Location Contig115: 126797-128413
Sequence    

Annotation

kegg
ID pop:POPTR_0008s12050g
description POPTRDRAFT_564537; pentatricopeptide repeat-containing family protein
nr
ID XP_012082100.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Jatropha curcas]
swissprot
ID Q9LN01
description Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
trembl
ID A0A067JZK9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18337 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at3g29230

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04528: 127503-127967
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000115_160 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Jatropha curcas]
2 Hb_028872_170 0.0849035373 - - conserved hypothetical protein [Ricinus communis]
3 Hb_158604_010 0.0865980551 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
4 Hb_146224_010 0.0973995068 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000101_350 0.1007479415 desease resistance Gene Name: NB-ARC NB-ARC domain-containing disease resistance protein, putative [Theobroma cacao]
6 Hb_002260_050 0.1135683839 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001440_040 0.1142680687 - - hypothetical protein POPTR_0008s03520g [Populus trichocarpa]
8 Hb_000028_510 0.1144596438 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
9 Hb_105641_010 0.1144745355 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
10 Hb_004117_100 0.1178178916 - - Vacuolar sorting receptor 1 precursor, putative [Ricinus communis]
11 Hb_001001_150 0.1205045426 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001301_130 0.1211764235 - - PREDICTED: uncharacterized protein LOC105632935 [Jatropha curcas]
13 Hb_005488_150 0.1219716101 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_000878_180 0.1222052298 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
15 Hb_008247_020 0.1232371137 - - PREDICTED: cyclin-L1-1-like [Jatropha curcas]
16 Hb_012490_090 0.1247705956 - - PREDICTED: myosin-17 [Jatropha curcas]
17 Hb_034432_030 0.1249400847 - - PREDICTED: probable glycosyltransferase At5g20260 isoform X1 [Jatropha curcas]
18 Hb_000014_050 0.1253733213 - - PREDICTED: V-type proton ATPase subunit B 2 [Elaeis guineensis]
19 Hb_048476_170 0.126430037 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II-like [Citrus sinensis]
20 Hb_003455_020 0.1264845942 - - PREDICTED: transportin-1 [Jatropha curcas]

Gene co-expression network

sample Hb_000115_160 Hb_000115_160 Hb_028872_170 Hb_028872_170 Hb_000115_160--Hb_028872_170 Hb_158604_010 Hb_158604_010 Hb_000115_160--Hb_158604_010 Hb_146224_010 Hb_146224_010 Hb_000115_160--Hb_146224_010 Hb_000101_350 Hb_000101_350 Hb_000115_160--Hb_000101_350 Hb_002260_050 Hb_002260_050 Hb_000115_160--Hb_002260_050 Hb_001440_040 Hb_001440_040 Hb_000115_160--Hb_001440_040 Hb_001301_130 Hb_001301_130 Hb_028872_170--Hb_001301_130 Hb_000028_510 Hb_000028_510 Hb_028872_170--Hb_000028_510 Hb_028872_170--Hb_158604_010 Hb_105641_010 Hb_105641_010 Hb_028872_170--Hb_105641_010 Hb_010362_030 Hb_010362_030 Hb_028872_170--Hb_010362_030 Hb_032920_130 Hb_032920_130 Hb_158604_010--Hb_032920_130 Hb_158604_010--Hb_105641_010 Hb_000483_380 Hb_000483_380 Hb_158604_010--Hb_000483_380 Hb_008112_030 Hb_008112_030 Hb_158604_010--Hb_008112_030 Hb_007380_140 Hb_007380_140 Hb_158604_010--Hb_007380_140 Hb_001001_150 Hb_001001_150 Hb_146224_010--Hb_001001_150 Hb_012490_090 Hb_012490_090 Hb_146224_010--Hb_012490_090 Hb_000313_120 Hb_000313_120 Hb_146224_010--Hb_000313_120 Hb_146224_010--Hb_002260_050 Hb_000215_140 Hb_000215_140 Hb_146224_010--Hb_000215_140 Hb_000101_350--Hb_008112_030 Hb_000331_330 Hb_000331_330 Hb_000101_350--Hb_000331_330 Hb_007676_100 Hb_007676_100 Hb_000101_350--Hb_007676_100 Hb_006882_020 Hb_006882_020 Hb_000101_350--Hb_006882_020 Hb_000960_050 Hb_000960_050 Hb_000101_350--Hb_000960_050 Hb_001322_130 Hb_001322_130 Hb_002260_050--Hb_001322_130 Hb_002260_050--Hb_012490_090 Hb_004410_120 Hb_004410_120 Hb_002260_050--Hb_004410_120 Hb_000174_290 Hb_000174_290 Hb_002260_050--Hb_000174_290 Hb_013358_010 Hb_013358_010 Hb_002260_050--Hb_013358_010 Hb_004553_030 Hb_004553_030 Hb_002260_050--Hb_004553_030 Hb_001235_230 Hb_001235_230 Hb_001440_040--Hb_001235_230 Hb_001401_060 Hb_001401_060 Hb_001440_040--Hb_001401_060 Hb_001440_040--Hb_032920_130 Hb_005488_150 Hb_005488_150 Hb_001440_040--Hb_005488_150 Hb_002044_170 Hb_002044_170 Hb_001440_040--Hb_002044_170 Hb_000069_320 Hb_000069_320 Hb_001440_040--Hb_000069_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.706028 1.48157 1.32693 0.950437 2.22701 1.43533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.372525 0.631264 1.57155 0.961961 0.993455

CAGE analysis