Hb_000101_350

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig101: 333175-336428
Sequence    

Annotation

kegg
ID tcc:TCM_046056
description NB-ARC domain-containing disease resistance protein, putative
nr
ID XP_007099578.1
description NB-ARC domain-containing disease resistance protein, putative [Theobroma cacao]
swissprot
ID Q7XA42
description Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2
trembl
ID S1RU10
description NB-ARC domain-containing disease resistance protein, putative OS=Theobroma cacao GN=TCM_046056 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00592: 334393-334831
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000101_350 0.0 desease resistance Gene Name: NB-ARC NB-ARC domain-containing disease resistance protein, putative [Theobroma cacao]
2 Hb_008112_030 0.0980395557 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000115_160 0.1007479415 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Jatropha curcas]
4 Hb_000331_330 0.1010426509 - - PREDICTED: transcription factor GTE10 isoform X1 [Jatropha curcas]
5 Hb_007676_100 0.1010545208 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
6 Hb_006882_020 0.1066143755 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000960_050 0.108488258 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
8 Hb_001195_320 0.1093982611 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
9 Hb_003581_250 0.1094697202 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
10 Hb_000878_180 0.1094748224 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
11 Hb_000453_060 0.1096041085 - - PREDICTED: pentatricopeptide repeat-containing protein At4g11690 [Jatropha curcas]
12 Hb_005488_150 0.1101059747 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_001021_200 0.1112905418 desease resistance Gene Name: AAA PREDICTED: peroxisome biogenesis protein 6 [Jatropha curcas]
14 Hb_002392_030 0.1113485765 - - WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related [Theobroma cacao]
15 Hb_004884_150 0.1113801712 - - PREDICTED: ubiquitin-activating enzyme E1 1-like [Jatropha curcas]
16 Hb_003029_110 0.1122121538 - - PREDICTED: uncharacterized protein LOC105640062 isoform X1 [Jatropha curcas]
17 Hb_001377_070 0.113179499 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002615_090 0.1131900466 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
19 Hb_006615_120 0.1139287095 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
20 Hb_000768_070 0.1148316726 transcription factor TF Family: SNF2 PREDICTED: TATA-binding protein-associated factor BTAF1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000101_350 Hb_000101_350 Hb_008112_030 Hb_008112_030 Hb_000101_350--Hb_008112_030 Hb_000115_160 Hb_000115_160 Hb_000101_350--Hb_000115_160 Hb_000331_330 Hb_000331_330 Hb_000101_350--Hb_000331_330 Hb_007676_100 Hb_007676_100 Hb_000101_350--Hb_007676_100 Hb_006882_020 Hb_006882_020 Hb_000101_350--Hb_006882_020 Hb_000960_050 Hb_000960_050 Hb_000101_350--Hb_000960_050 Hb_002174_020 Hb_002174_020 Hb_008112_030--Hb_002174_020 Hb_007635_030 Hb_007635_030 Hb_008112_030--Hb_007635_030 Hb_008112_030--Hb_000960_050 Hb_004453_110 Hb_004453_110 Hb_008112_030--Hb_004453_110 Hb_005731_090 Hb_005731_090 Hb_008112_030--Hb_005731_090 Hb_006252_020 Hb_006252_020 Hb_008112_030--Hb_006252_020 Hb_028872_170 Hb_028872_170 Hb_000115_160--Hb_028872_170 Hb_158604_010 Hb_158604_010 Hb_000115_160--Hb_158604_010 Hb_146224_010 Hb_146224_010 Hb_000115_160--Hb_146224_010 Hb_002260_050 Hb_002260_050 Hb_000115_160--Hb_002260_050 Hb_001440_040 Hb_001440_040 Hb_000115_160--Hb_001440_040 Hb_000331_330--Hb_007676_100 Hb_001243_060 Hb_001243_060 Hb_000331_330--Hb_001243_060 Hb_000116_060 Hb_000116_060 Hb_000331_330--Hb_000116_060 Hb_004128_050 Hb_004128_050 Hb_000331_330--Hb_004128_050 Hb_005489_080 Hb_005489_080 Hb_000331_330--Hb_005489_080 Hb_002615_090 Hb_002615_090 Hb_000331_330--Hb_002615_090 Hb_004659_080 Hb_004659_080 Hb_007676_100--Hb_004659_080 Hb_000959_040 Hb_000959_040 Hb_007676_100--Hb_000959_040 Hb_007676_100--Hb_006252_020 Hb_002188_110 Hb_002188_110 Hb_007676_100--Hb_002188_110 Hb_007676_100--Hb_004128_050 Hb_003371_110 Hb_003371_110 Hb_006882_020--Hb_003371_110 Hb_006882_020--Hb_004453_110 Hb_007943_110 Hb_007943_110 Hb_006882_020--Hb_007943_110 Hb_006882_020--Hb_008112_030 Hb_000429_220 Hb_000429_220 Hb_006882_020--Hb_000429_220 Hb_003029_110 Hb_003029_110 Hb_006882_020--Hb_003029_110 Hb_000230_090 Hb_000230_090 Hb_000960_050--Hb_000230_090 Hb_009112_010 Hb_009112_010 Hb_000960_050--Hb_009112_010 Hb_000406_230 Hb_000406_230 Hb_000960_050--Hb_000406_230 Hb_000914_120 Hb_000914_120 Hb_000960_050--Hb_000914_120 Hb_000174_060 Hb_000174_060 Hb_000960_050--Hb_000174_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.576024 1.52032 0.900832 0.678795 1.63681 1.70625
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.354084 0.71981 0.865908 0.773674 0.718141

CAGE analysis