Hb_001301_130

Information

Type -
Description -
Location Contig1301: 100667-106808
Sequence    

Annotation

kegg
ID rcu:RCOM_0585680
description hypothetical protein
nr
ID XP_012070792.1
description PREDICTED: uncharacterized protein LOC105632935 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L3M9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00862 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09006: 104471-104846 , PASA_asmbl_09007: 100911-106675
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001301_130 0.0 - - PREDICTED: uncharacterized protein LOC105632935 [Jatropha curcas]
2 Hb_000028_510 0.079839597 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
3 Hb_028872_170 0.081308048 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001021_200 0.0944631254 desease resistance Gene Name: AAA PREDICTED: peroxisome biogenesis protein 6 [Jatropha curcas]
5 Hb_009486_080 0.0965623529 - - PREDICTED: uncharacterized protein LOC105643242 [Jatropha curcas]
6 Hb_000343_110 0.1010409617 - - Heat shock 70 kDa protein, putative [Ricinus communis]
7 Hb_003292_050 0.1026358971 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
8 Hb_032920_130 0.1041588974 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
9 Hb_001277_300 0.1044379045 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
10 Hb_105641_010 0.1072576192 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
11 Hb_000260_560 0.1096594143 - - PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic [Jatropha curcas]
12 Hb_003929_140 0.1098066591 - - DNA binding protein, putative [Ricinus communis]
13 Hb_000122_220 0.1100743735 - - Prenylated Rab acceptor protein, putative [Ricinus communis]
14 Hb_010362_030 0.1113839968 - - PREDICTED: QWRF motif-containing protein 2 [Jatropha curcas]
15 Hb_000573_060 0.1114024198 - - PREDICTED: eukaryotic translation initiation factor 2D isoform X1 [Jatropha curcas]
16 Hb_000086_150 0.1119873038 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X1 [Jatropha curcas]
17 Hb_000376_060 0.1124374455 - - PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]
18 Hb_002022_070 0.1129210265 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
19 Hb_007305_020 0.1135763784 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
20 Hb_001454_170 0.1139183689 - - PREDICTED: uncharacterized protein LOC105643431 [Jatropha curcas]

Gene co-expression network

sample Hb_001301_130 Hb_001301_130 Hb_000028_510 Hb_000028_510 Hb_001301_130--Hb_000028_510 Hb_028872_170 Hb_028872_170 Hb_001301_130--Hb_028872_170 Hb_001021_200 Hb_001021_200 Hb_001301_130--Hb_001021_200 Hb_009486_080 Hb_009486_080 Hb_001301_130--Hb_009486_080 Hb_000343_110 Hb_000343_110 Hb_001301_130--Hb_000343_110 Hb_003292_050 Hb_003292_050 Hb_001301_130--Hb_003292_050 Hb_002022_070 Hb_002022_070 Hb_000028_510--Hb_002022_070 Hb_003929_140 Hb_003929_140 Hb_000028_510--Hb_003929_140 Hb_000028_510--Hb_001021_200 Hb_002267_140 Hb_002267_140 Hb_000028_510--Hb_002267_140 Hb_004629_010 Hb_004629_010 Hb_000028_510--Hb_004629_010 Hb_002615_090 Hb_002615_090 Hb_000028_510--Hb_002615_090 Hb_028872_170--Hb_000028_510 Hb_000115_160 Hb_000115_160 Hb_028872_170--Hb_000115_160 Hb_158604_010 Hb_158604_010 Hb_028872_170--Hb_158604_010 Hb_105641_010 Hb_105641_010 Hb_028872_170--Hb_105641_010 Hb_010362_030 Hb_010362_030 Hb_028872_170--Hb_010362_030 Hb_000577_030 Hb_000577_030 Hb_001021_200--Hb_000577_030 Hb_000230_090 Hb_000230_090 Hb_001021_200--Hb_000230_090 Hb_001021_200--Hb_002022_070 Hb_005104_010 Hb_005104_010 Hb_001021_200--Hb_005104_010 Hb_000917_160 Hb_000917_160 Hb_001021_200--Hb_000917_160 Hb_000236_470 Hb_000236_470 Hb_001021_200--Hb_000236_470 Hb_000086_150 Hb_000086_150 Hb_009486_080--Hb_000086_150 Hb_002641_130 Hb_002641_130 Hb_009486_080--Hb_002641_130 Hb_000573_060 Hb_000573_060 Hb_009486_080--Hb_000573_060 Hb_002014_040 Hb_002014_040 Hb_009486_080--Hb_002014_040 Hb_001454_170 Hb_001454_170 Hb_009486_080--Hb_001454_170 Hb_000260_560 Hb_000260_560 Hb_009486_080--Hb_000260_560 Hb_011344_020 Hb_011344_020 Hb_000343_110--Hb_011344_020 Hb_000343_110--Hb_000573_060 Hb_002044_170 Hb_002044_170 Hb_000343_110--Hb_002044_170 Hb_128743_010 Hb_128743_010 Hb_000343_110--Hb_128743_010 Hb_000343_110--Hb_158604_010 Hb_032920_130 Hb_032920_130 Hb_000343_110--Hb_032920_130 Hb_003292_050--Hb_010362_030 Hb_000402_120 Hb_000402_120 Hb_003292_050--Hb_000402_120 Hb_001140_030 Hb_001140_030 Hb_003292_050--Hb_001140_030 Hb_032264_060 Hb_032264_060 Hb_003292_050--Hb_032264_060 Hb_000922_020 Hb_000922_020 Hb_003292_050--Hb_000922_020 Hb_000042_340 Hb_000042_340 Hb_003292_050--Hb_000042_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.2449 32.8588 25.8936 14.737 35.1673 21.8807
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.57171 6.492 16.8792 9.58058 23.57

CAGE analysis