Hb_105641_010

Information

Type -
Description -
Location Contig105641: 50-2381
Sequence    

Annotation

kegg
ID rcu:RCOM_1506590
description Conserved oligomeric Golgi complex component, putative
nr
ID XP_002511204.1
description Conserved oligomeric Golgi complex component, putative [Ricinus communis]
swissprot
ID Q14746
description Conserved oligomeric Golgi complex subunit 2 OS=Homo sapiens GN=COG2 PE=1 SV=1
trembl
ID B9RAH9
description Conserved oligomeric Golgi complex component, putative OS=Ricinus communis GN=RCOM_1506590 PE=4 SV=1
Gene Ontology
ID GO:0016020
description conserved oligomeric golgi complex subunit 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_105641_010 0.0 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
2 Hb_007929_080 0.0757977656 - - PREDICTED: transforming growth factor-beta receptor-associated protein 1 [Jatropha curcas]
3 Hb_158604_010 0.0787471196 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
4 Hb_001021_200 0.0857081397 desease resistance Gene Name: AAA PREDICTED: peroxisome biogenesis protein 6 [Jatropha curcas]
5 Hb_003929_140 0.0861729073 - - DNA binding protein, putative [Ricinus communis]
6 Hb_000028_510 0.0868007311 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
7 Hb_143766_110 0.0874780494 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 1 [Jatropha curcas]
8 Hb_000577_030 0.0880177236 - - Ubiquitin carboxyl-terminal hydrolase 12 -like protein [Gossypium arboreum]
9 Hb_001952_120 0.089832848 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
10 Hb_001140_030 0.0906333322 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
11 Hb_002022_070 0.0916721803 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
12 Hb_000661_020 0.0950108165 - - BnaC08g27190D [Brassica napus]
13 Hb_008695_110 0.0956404637 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
14 Hb_001307_080 0.095956295 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
15 Hb_000574_440 0.0967097634 - - PREDICTED: uncharacterized protein LOC105634833 [Jatropha curcas]
16 Hb_003040_020 0.0967658659 - - PREDICTED: protein cereblon [Jatropha curcas]
17 Hb_032920_130 0.0973486128 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
18 Hb_005188_060 0.0976515157 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
19 Hb_005965_030 0.0976633168 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
20 Hb_001488_200 0.0988578089 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_105641_010 Hb_105641_010 Hb_007929_080 Hb_007929_080 Hb_105641_010--Hb_007929_080 Hb_158604_010 Hb_158604_010 Hb_105641_010--Hb_158604_010 Hb_001021_200 Hb_001021_200 Hb_105641_010--Hb_001021_200 Hb_003929_140 Hb_003929_140 Hb_105641_010--Hb_003929_140 Hb_000028_510 Hb_000028_510 Hb_105641_010--Hb_000028_510 Hb_143766_110 Hb_143766_110 Hb_105641_010--Hb_143766_110 Hb_002571_030 Hb_002571_030 Hb_007929_080--Hb_002571_030 Hb_009771_110 Hb_009771_110 Hb_007929_080--Hb_009771_110 Hb_000523_080 Hb_000523_080 Hb_007929_080--Hb_000523_080 Hb_001405_190 Hb_001405_190 Hb_007929_080--Hb_001405_190 Hb_001377_110 Hb_001377_110 Hb_007929_080--Hb_001377_110 Hb_006618_090 Hb_006618_090 Hb_007929_080--Hb_006618_090 Hb_032920_130 Hb_032920_130 Hb_158604_010--Hb_032920_130 Hb_000115_160 Hb_000115_160 Hb_158604_010--Hb_000115_160 Hb_000483_380 Hb_000483_380 Hb_158604_010--Hb_000483_380 Hb_008112_030 Hb_008112_030 Hb_158604_010--Hb_008112_030 Hb_007380_140 Hb_007380_140 Hb_158604_010--Hb_007380_140 Hb_000577_030 Hb_000577_030 Hb_001021_200--Hb_000577_030 Hb_000230_090 Hb_000230_090 Hb_001021_200--Hb_000230_090 Hb_002022_070 Hb_002022_070 Hb_001021_200--Hb_002022_070 Hb_005104_010 Hb_005104_010 Hb_001021_200--Hb_005104_010 Hb_000917_160 Hb_000917_160 Hb_001021_200--Hb_000917_160 Hb_000236_470 Hb_000236_470 Hb_001021_200--Hb_000236_470 Hb_000661_020 Hb_000661_020 Hb_003929_140--Hb_000661_020 Hb_003929_140--Hb_002022_070 Hb_003929_140--Hb_000028_510 Hb_004629_010 Hb_004629_010 Hb_003929_140--Hb_004629_010 Hb_000753_100 Hb_000753_100 Hb_003929_140--Hb_000753_100 Hb_001231_030 Hb_001231_030 Hb_003929_140--Hb_001231_030 Hb_000028_510--Hb_002022_070 Hb_000028_510--Hb_001021_200 Hb_002267_140 Hb_002267_140 Hb_000028_510--Hb_002267_140 Hb_000028_510--Hb_004629_010 Hb_002615_090 Hb_002615_090 Hb_000028_510--Hb_002615_090 Hb_143766_110--Hb_001405_190 Hb_000162_030 Hb_000162_030 Hb_143766_110--Hb_000162_030 Hb_000260_440 Hb_000260_440 Hb_143766_110--Hb_000260_440 Hb_000264_070 Hb_000264_070 Hb_143766_110--Hb_000264_070 Hb_010362_030 Hb_010362_030 Hb_143766_110--Hb_010362_030 Hb_143766_110--Hb_007929_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.6287 19.9381 21.6142 9.03264 28.631 18.4245
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.63525 6.2501 14.7183 13.157 12.1457

CAGE analysis