Hb_004553_030

Information

Type -
Description -
Location Contig4553: 48981-60202
Sequence    

Annotation

kegg
ID rcu:RCOM_1111800
description hypothetical protein
nr
ID XP_012066281.1
description PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LEG1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23842 PE=4 SV=1
Gene Ontology
ID GO:0005622
description bzip transcription factor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43422: 49025-60469
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004553_030 0.0 - - PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]
2 Hb_001195_530 0.0646287085 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000809_170 0.0689981297 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog isoform X1 [Jatropha curcas]
4 Hb_000402_230 0.0703826764 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
5 Hb_003666_020 0.0716543561 - - kinase, putative [Ricinus communis]
6 Hb_001258_020 0.073036253 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
7 Hb_002217_170 0.0732979518 - - PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X1 [Gossypium raimondii]
8 Hb_162275_050 0.0758382059 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
9 Hb_001089_050 0.0762089051 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
10 Hb_000976_210 0.077607523 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
11 Hb_000614_210 0.0781558058 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
12 Hb_020831_030 0.0785090383 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001410_020 0.0799093309 - - cdk8, putative [Ricinus communis]
14 Hb_007017_040 0.0808783982 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
15 Hb_000009_500 0.0810991748 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
16 Hb_002006_040 0.0815436295 - - PREDICTED: translation initiation factor eIF-2B subunit delta isoform X1 [Jatropha curcas]
17 Hb_000866_460 0.0815623591 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic-like [Jatropha curcas]
18 Hb_000025_730 0.0816948826 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
19 Hb_000049_260 0.082153532 - - WD-repeat protein, putative [Ricinus communis]
20 Hb_008253_020 0.0849043103 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]

Gene co-expression network

sample Hb_004553_030 Hb_004553_030 Hb_001195_530 Hb_001195_530 Hb_004553_030--Hb_001195_530 Hb_000809_170 Hb_000809_170 Hb_004553_030--Hb_000809_170 Hb_000402_230 Hb_000402_230 Hb_004553_030--Hb_000402_230 Hb_003666_020 Hb_003666_020 Hb_004553_030--Hb_003666_020 Hb_001258_020 Hb_001258_020 Hb_004553_030--Hb_001258_020 Hb_002217_170 Hb_002217_170 Hb_004553_030--Hb_002217_170 Hb_020831_030 Hb_020831_030 Hb_001195_530--Hb_020831_030 Hb_105105_010 Hb_105105_010 Hb_001195_530--Hb_105105_010 Hb_003640_040 Hb_003640_040 Hb_001195_530--Hb_003640_040 Hb_001408_140 Hb_001408_140 Hb_001195_530--Hb_001408_140 Hb_002056_090 Hb_002056_090 Hb_001195_530--Hb_002056_090 Hb_002205_250 Hb_002205_250 Hb_001195_530--Hb_002205_250 Hb_001545_150 Hb_001545_150 Hb_000809_170--Hb_001545_150 Hb_000809_170--Hb_000402_230 Hb_002768_050 Hb_002768_050 Hb_000809_170--Hb_002768_050 Hb_000949_020 Hb_000949_020 Hb_000809_170--Hb_000949_020 Hb_000720_150 Hb_000720_150 Hb_000809_170--Hb_000720_150 Hb_004143_100 Hb_004143_100 Hb_000402_230--Hb_004143_100 Hb_001089_050 Hb_001089_050 Hb_000402_230--Hb_001089_050 Hb_000009_500 Hb_000009_500 Hb_000402_230--Hb_000009_500 Hb_008253_020 Hb_008253_020 Hb_000402_230--Hb_008253_020 Hb_003866_080 Hb_003866_080 Hb_000402_230--Hb_003866_080 Hb_011849_040 Hb_011849_040 Hb_000402_230--Hb_011849_040 Hb_000928_220 Hb_000928_220 Hb_003666_020--Hb_000928_220 Hb_000402_080 Hb_000402_080 Hb_003666_020--Hb_000402_080 Hb_003666_020--Hb_001258_020 Hb_008103_060 Hb_008103_060 Hb_003666_020--Hb_008103_060 Hb_001205_200 Hb_001205_200 Hb_003666_020--Hb_001205_200 Hb_005288_170 Hb_005288_170 Hb_001258_020--Hb_005288_170 Hb_001054_030 Hb_001054_030 Hb_001258_020--Hb_001054_030 Hb_000260_180 Hb_000260_180 Hb_001258_020--Hb_000260_180 Hb_000260_640 Hb_000260_640 Hb_001258_020--Hb_000260_640 Hb_003835_070 Hb_003835_070 Hb_002217_170--Hb_003835_070 Hb_002217_170--Hb_001195_530 Hb_000317_370 Hb_000317_370 Hb_002217_170--Hb_000317_370 Hb_003464_090 Hb_003464_090 Hb_002217_170--Hb_003464_090 Hb_002217_170--Hb_105105_010 Hb_000614_210 Hb_000614_210 Hb_002217_170--Hb_000614_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.7885 38.5763 20.5132 27.5244 30.9344 18.0071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.7117 20.5814 23.3772 19.5286 20.1262

CAGE analysis