Hb_001258_020

Information

Type -
Description -
Location Contig1258: 46078-47235
Sequence    

Annotation

kegg
ID pop:POPTR_0015s14650g
description POPTRDRAFT_575673; hypothetical protein
nr
ID XP_012079517.1
description PREDICTED: protein RMD5 homolog A [Jatropha curcas]
swissprot
ID Q6GLP4
description Protein RMD5 homolog A OS=Xenopus laevis GN=rmnd5a PE=2 SV=1
trembl
ID A0A067KK11
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12615 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein rmd5 homolog a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07878: 46216-50605
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001258_020 0.0 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
2 Hb_004553_030 0.073036253 - - PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]
3 Hb_003666_020 0.0813943665 - - kinase, putative [Ricinus communis]
4 Hb_005288_170 0.0876058443 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08610 [Populus euphratica]
5 Hb_001054_030 0.0908322351 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
6 Hb_000260_180 0.0952823106 - - PREDICTED: KH domain-containing protein At2g38610 [Jatropha curcas]
7 Hb_000260_640 0.095990566 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
8 Hb_000049_260 0.0960811175 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_003682_030 0.0970279911 - - hypothetical protein CICLE_v10020876mg [Citrus clementina]
10 Hb_005541_010 0.0973315877 - - PREDICTED: uncharacterized protein LOC105629250 [Jatropha curcas]
11 Hb_001089_050 0.0991345775 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
12 Hb_000809_170 0.0997786192 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog isoform X1 [Jatropha curcas]
13 Hb_000861_080 0.1009088609 - - PREDICTED: protein ELC-like [Jatropha curcas]
14 Hb_003181_040 0.1009909202 - - PREDICTED: uncharacterized protein LOC105647655 isoform X1 [Jatropha curcas]
15 Hb_000402_230 0.1024667187 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
16 Hb_008103_060 0.1029099382 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
17 Hb_002542_130 0.1032238587 transcription factor TF Family: HB Homeobox protein LUMINIDEPENDENS, putative [Ricinus communis]
18 Hb_010712_090 0.1033590447 - - PREDICTED: uncharacterized protein LOC105631276 [Jatropha curcas]
19 Hb_008253_020 0.1049842779 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
20 Hb_000705_170 0.1054224178 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Jatropha curcas]

Gene co-expression network

sample Hb_001258_020 Hb_001258_020 Hb_004553_030 Hb_004553_030 Hb_001258_020--Hb_004553_030 Hb_003666_020 Hb_003666_020 Hb_001258_020--Hb_003666_020 Hb_005288_170 Hb_005288_170 Hb_001258_020--Hb_005288_170 Hb_001054_030 Hb_001054_030 Hb_001258_020--Hb_001054_030 Hb_000260_180 Hb_000260_180 Hb_001258_020--Hb_000260_180 Hb_000260_640 Hb_000260_640 Hb_001258_020--Hb_000260_640 Hb_001195_530 Hb_001195_530 Hb_004553_030--Hb_001195_530 Hb_000809_170 Hb_000809_170 Hb_004553_030--Hb_000809_170 Hb_000402_230 Hb_000402_230 Hb_004553_030--Hb_000402_230 Hb_004553_030--Hb_003666_020 Hb_002217_170 Hb_002217_170 Hb_004553_030--Hb_002217_170 Hb_000928_220 Hb_000928_220 Hb_003666_020--Hb_000928_220 Hb_000402_080 Hb_000402_080 Hb_003666_020--Hb_000402_080 Hb_008103_060 Hb_008103_060 Hb_003666_020--Hb_008103_060 Hb_001205_200 Hb_001205_200 Hb_003666_020--Hb_001205_200 Hb_000705_170 Hb_000705_170 Hb_005288_170--Hb_000705_170 Hb_000049_260 Hb_000049_260 Hb_005288_170--Hb_000049_260 Hb_004236_050 Hb_004236_050 Hb_005288_170--Hb_004236_050 Hb_000861_080 Hb_000861_080 Hb_005288_170--Hb_000861_080 Hb_003929_280 Hb_003929_280 Hb_005288_170--Hb_003929_280 Hb_000454_130 Hb_000454_130 Hb_005288_170--Hb_000454_130 Hb_001054_030--Hb_000260_640 Hb_002253_080 Hb_002253_080 Hb_001054_030--Hb_002253_080 Hb_003729_030 Hb_003729_030 Hb_001054_030--Hb_003729_030 Hb_000291_090 Hb_000291_090 Hb_001054_030--Hb_000291_090 Hb_006117_080 Hb_006117_080 Hb_001054_030--Hb_006117_080 Hb_000321_150 Hb_000321_150 Hb_001054_030--Hb_000321_150 Hb_001410_020 Hb_001410_020 Hb_000260_180--Hb_001410_020 Hb_006588_210 Hb_006588_210 Hb_000260_180--Hb_006588_210 Hb_012779_090 Hb_012779_090 Hb_000260_180--Hb_012779_090 Hb_162275_050 Hb_162275_050 Hb_000260_180--Hb_162275_050 Hb_005541_010 Hb_005541_010 Hb_000260_180--Hb_005541_010 Hb_000025_730 Hb_000025_730 Hb_000260_180--Hb_000025_730 Hb_000260_640--Hb_006117_080 Hb_000260_640--Hb_002253_080 Hb_000260_640--Hb_000321_150 Hb_000661_200 Hb_000661_200 Hb_000260_640--Hb_000661_200 Hb_000260_640--Hb_003729_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.0258 48.4946 19.0273 25.0639 33.8165 19.3825
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.4978 22.0162 19.2338 12.3903 17.6105

CAGE analysis