Hb_000809_170

Information

Type -
Description -
Location Contig809: 141916-145898
Sequence    

Annotation

kegg
ID rcu:RCOM_0601970
description hypothetical protein
nr
ID XP_012079187.1
description PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog isoform X1 [Jatropha curcas]
swissprot
ID P38262
description SIR4-interacting protein SIF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SIF2 PE=1 SV=2
trembl
ID B9S8K1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0601970 PE=4 SV=1
Gene Ontology
ID GO:0080008
description guanine nucleotide-binding protein subunit beta-like protein 1 homolog isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59149: 130329-145232 , PASA_asmbl_59152: 130329-144096 , PASA_asmbl_59154: 145335-145549
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000809_170 0.0 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog isoform X1 [Jatropha curcas]
2 Hb_001545_150 0.0600015561 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
3 Hb_000402_230 0.0662216948 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
4 Hb_004553_030 0.0689981297 - - PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]
5 Hb_002768_050 0.0758834372 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
6 Hb_000949_020 0.0761405796 transcription factor TF Family: Orphans PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
7 Hb_000720_150 0.0770741515 - - PREDICTED: uncharacterized protein LOC105645849 isoform X3 [Jatropha curcas]
8 Hb_000363_120 0.0770998365 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
9 Hb_001673_050 0.0771994539 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
10 Hb_001668_010 0.0772690056 - - PREDICTED: RNA-binding protein with multiple splicing [Jatropha curcas]
11 Hb_000676_330 0.0773005225 - - protein with unknown function [Ricinus communis]
12 Hb_001541_250 0.0778536572 - - PREDICTED: integrator complex subunit 9 homolog isoform X1 [Jatropha curcas]
13 Hb_004517_020 0.0779405197 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
14 Hb_000120_910 0.0780824041 - - plant ubiquilin, putative [Ricinus communis]
15 Hb_001089_050 0.0787039684 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
16 Hb_003398_080 0.0793142192 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
17 Hb_000479_240 0.0803186209 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
18 Hb_000008_240 0.0805223029 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001723_010 0.0811685367 - - PREDICTED: E3 ubiquitin-protein ligase UPL6 [Jatropha curcas]
20 Hb_134362_010 0.0821361111 - - PREDICTED: FAS-associated factor 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000809_170 Hb_000809_170 Hb_001545_150 Hb_001545_150 Hb_000809_170--Hb_001545_150 Hb_000402_230 Hb_000402_230 Hb_000809_170--Hb_000402_230 Hb_004553_030 Hb_004553_030 Hb_000809_170--Hb_004553_030 Hb_002768_050 Hb_002768_050 Hb_000809_170--Hb_002768_050 Hb_000949_020 Hb_000949_020 Hb_000809_170--Hb_000949_020 Hb_000720_150 Hb_000720_150 Hb_000809_170--Hb_000720_150 Hb_000479_070 Hb_000479_070 Hb_001545_150--Hb_000479_070 Hb_001089_050 Hb_001089_050 Hb_001545_150--Hb_001089_050 Hb_031042_050 Hb_031042_050 Hb_001545_150--Hb_031042_050 Hb_001545_150--Hb_000402_230 Hb_003918_030 Hb_003918_030 Hb_001545_150--Hb_003918_030 Hb_001279_120 Hb_001279_120 Hb_001545_150--Hb_001279_120 Hb_004143_100 Hb_004143_100 Hb_000402_230--Hb_004143_100 Hb_000402_230--Hb_001089_050 Hb_000009_500 Hb_000009_500 Hb_000402_230--Hb_000009_500 Hb_008253_020 Hb_008253_020 Hb_000402_230--Hb_008253_020 Hb_003866_080 Hb_003866_080 Hb_000402_230--Hb_003866_080 Hb_011849_040 Hb_011849_040 Hb_000402_230--Hb_011849_040 Hb_001195_530 Hb_001195_530 Hb_004553_030--Hb_001195_530 Hb_004553_030--Hb_000402_230 Hb_003666_020 Hb_003666_020 Hb_004553_030--Hb_003666_020 Hb_001258_020 Hb_001258_020 Hb_004553_030--Hb_001258_020 Hb_002217_170 Hb_002217_170 Hb_004553_030--Hb_002217_170 Hb_000110_350 Hb_000110_350 Hb_002768_050--Hb_000110_350 Hb_000445_060 Hb_000445_060 Hb_002768_050--Hb_000445_060 Hb_000008_240 Hb_000008_240 Hb_002768_050--Hb_000008_240 Hb_000676_330 Hb_000676_330 Hb_002768_050--Hb_000676_330 Hb_004517_020 Hb_004517_020 Hb_002768_050--Hb_004517_020 Hb_003929_210 Hb_003929_210 Hb_002768_050--Hb_003929_210 Hb_000120_910 Hb_000120_910 Hb_000949_020--Hb_000120_910 Hb_001673_050 Hb_001673_050 Hb_000949_020--Hb_001673_050 Hb_004429_010 Hb_004429_010 Hb_000949_020--Hb_004429_010 Hb_002284_170 Hb_002284_170 Hb_000949_020--Hb_002284_170 Hb_004129_070 Hb_004129_070 Hb_000949_020--Hb_004129_070 Hb_000949_020--Hb_004517_020 Hb_024185_010 Hb_024185_010 Hb_000720_150--Hb_024185_010 Hb_000703_200 Hb_000703_200 Hb_000720_150--Hb_000703_200 Hb_005188_040 Hb_005188_040 Hb_000720_150--Hb_005188_040 Hb_000176_100 Hb_000176_100 Hb_000720_150--Hb_000176_100 Hb_000720_150--Hb_001545_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.64579 12.2812 6.03523 7.24852 6.97746 4.43631
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.62202 4.63071 4.65745 6.23136 6.07555

CAGE analysis