Hb_162378_010

Information

Type -
Description -
Location Contig162378: 142-915
Sequence    

Annotation

kegg
ID pop:POPTR_0003s13760g
description POPTRDRAFT_554469; hypothetical protein
nr
ID KDP25324.1
description hypothetical protein JCGZ_20480 [Jatropha curcas]
swissprot
ID O82509
description Protein trichome birefringence-like 23 OS=Arabidopsis thaliana GN=TBL23 PE=2 SV=1
trembl
ID A0A067K0K1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20480 PE=4 SV=1
Gene Ontology
ID GO:0003746
description protein trichome birefringence-like 23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_162378_010 0.0 - - hypothetical protein JCGZ_20480 [Jatropha curcas]
2 Hb_003858_040 0.1108235691 - - hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
3 Hb_000002_490 0.1178319254 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
4 Hb_001050_010 0.1225345246 - - Advillin [Gossypium arboreum]
5 Hb_000556_150 0.1249109488 - - PREDICTED: fasciclin-like arabinogalactan protein 10 [Populus euphratica]
6 Hb_000480_010 0.1295078382 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000392_370 0.130532313 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
8 Hb_001501_060 0.131271406 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002267_090 0.1333657611 - - Cytochrome c oxidase assembly protein COX19, putative [Ricinus communis]
10 Hb_002249_160 0.1338932788 - - -
11 Hb_008556_030 0.1339258582 - - PREDICTED: uncharacterized protein LOC105648021 isoform X1 [Jatropha curcas]
12 Hb_005656_210 0.134802844 - - PREDICTED: uncharacterized protein LOC105637440 [Jatropha curcas]
13 Hb_000640_220 0.1353554693 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]
14 Hb_009485_020 0.1363493945 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
15 Hb_000322_090 0.1395682649 - - diacylglycerol O-acyltransferase 1 [Jatropha curcas]
16 Hb_002836_140 0.1395720545 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
17 Hb_000265_220 0.1395764713 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
18 Hb_001040_040 0.1414593888 - - Uncharacterized protein TCM_029905 [Theobroma cacao]
19 Hb_002311_070 0.1417805548 - - PREDICTED: AMSH-like ubiquitin thioesterase 3 [Jatropha curcas]
20 Hb_001418_040 0.1420267677 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [Jatropha curcas]

Gene co-expression network

sample Hb_162378_010 Hb_162378_010 Hb_003858_040 Hb_003858_040 Hb_162378_010--Hb_003858_040 Hb_000002_490 Hb_000002_490 Hb_162378_010--Hb_000002_490 Hb_001050_010 Hb_001050_010 Hb_162378_010--Hb_001050_010 Hb_000556_150 Hb_000556_150 Hb_162378_010--Hb_000556_150 Hb_000480_010 Hb_000480_010 Hb_162378_010--Hb_000480_010 Hb_000392_370 Hb_000392_370 Hb_162378_010--Hb_000392_370 Hb_000009_480 Hb_000009_480 Hb_003858_040--Hb_000009_480 Hb_073973_160 Hb_073973_160 Hb_003858_040--Hb_073973_160 Hb_003858_040--Hb_001050_010 Hb_000868_060 Hb_000868_060 Hb_003858_040--Hb_000868_060 Hb_003858_040--Hb_000002_490 Hb_001396_280 Hb_001396_280 Hb_003858_040--Hb_001396_280 Hb_003126_100 Hb_003126_100 Hb_000002_490--Hb_003126_100 Hb_002311_070 Hb_002311_070 Hb_000002_490--Hb_002311_070 Hb_000002_490--Hb_001050_010 Hb_000933_020 Hb_000933_020 Hb_000002_490--Hb_000933_020 Hb_000718_070 Hb_000718_070 Hb_000002_490--Hb_000718_070 Hb_011618_080 Hb_011618_080 Hb_000002_490--Hb_011618_080 Hb_001050_010--Hb_000868_060 Hb_011915_010 Hb_011915_010 Hb_001050_010--Hb_011915_010 Hb_001900_120 Hb_001900_120 Hb_001050_010--Hb_001900_120 Hb_011609_170 Hb_011609_170 Hb_001050_010--Hb_011609_170 Hb_000395_020 Hb_000395_020 Hb_001050_010--Hb_000395_020 Hb_000556_150--Hb_000392_370 Hb_005463_130 Hb_005463_130 Hb_000556_150--Hb_005463_130 Hb_086022_010 Hb_086022_010 Hb_000556_150--Hb_086022_010 Hb_007919_080 Hb_007919_080 Hb_000556_150--Hb_007919_080 Hb_001501_080 Hb_001501_080 Hb_000556_150--Hb_001501_080 Hb_007904_210 Hb_007904_210 Hb_000556_150--Hb_007904_210 Hb_000480_010--Hb_003126_100 Hb_001102_080 Hb_001102_080 Hb_000480_010--Hb_001102_080 Hb_002888_070 Hb_002888_070 Hb_000480_010--Hb_002888_070 Hb_001341_120 Hb_001341_120 Hb_000480_010--Hb_001341_120 Hb_000480_010--Hb_000868_060 Hb_007044_040 Hb_007044_040 Hb_000480_010--Hb_007044_040 Hb_017295_010 Hb_017295_010 Hb_000392_370--Hb_017295_010 Hb_002750_050 Hb_002750_050 Hb_000392_370--Hb_002750_050 Hb_058999_030 Hb_058999_030 Hb_000392_370--Hb_058999_030 Hb_001584_370 Hb_001584_370 Hb_000392_370--Hb_001584_370 Hb_003430_090 Hb_003430_090 Hb_000392_370--Hb_003430_090 Hb_000392_370--Hb_001396_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.1568 6.87082 18.3043 22.3512 37.479 17.0367
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.52124 7.65255 7.49979 7.43816 6.65634

CAGE analysis