Hb_001584_370

Information

Type -
Description -
Location Contig1584: 230976-233763
Sequence    

Annotation

kegg
ID pop:POPTR_0013s00510g
description POPTRDRAFT_570665; glucan endo-1 family protein
nr
ID XP_012088835.1
description PREDICTED: clathrin coat assembly protein AP180 [Jatropha curcas]
swissprot
ID O65399
description Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=3
trembl
ID A0A067JHD0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23174 PE=3 SV=1
Gene Ontology
ID GO:0004553
description glucan endo-1 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14017: 231083-233742
cDNA
(Sanger)
(ID:Location)		 001_A11.ab1: 231085-232100

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001584_370 0.0 - - PREDICTED: clathrin coat assembly protein AP180 [Jatropha curcas]
2 Hb_000392_370 0.0903317122 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
3 Hb_000021_040 0.1059528 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
4 Hb_000002_490 0.1063765765 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
5 Hb_002249_120 0.1075809214 - - RNA-binding protein, putative [Ricinus communis]
6 Hb_007426_150 0.1120026716 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
7 Hb_000933_020 0.1150134464 - - conserved hypothetical protein [Ricinus communis]
8 Hb_058999_030 0.1164079575 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
9 Hb_005408_020 0.1176807188 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003126_100 0.1181945455 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
11 Hb_011618_080 0.1185601621 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
12 Hb_002044_050 0.1186343355 - - -
13 Hb_000207_190 0.1188048083 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
14 Hb_002750_050 0.1220904589 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]
15 Hb_003430_090 0.1224209313 - - ATP binding protein, putative [Ricinus communis]
16 Hb_000735_100 0.1224359029 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
17 Hb_007592_030 0.1233857576 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
18 Hb_017295_010 0.1240315117 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
19 Hb_001473_090 0.1242352932 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
20 Hb_000375_030 0.1243137079 - - -

Gene co-expression network

sample Hb_001584_370 Hb_001584_370 Hb_000392_370 Hb_000392_370 Hb_001584_370--Hb_000392_370 Hb_000021_040 Hb_000021_040 Hb_001584_370--Hb_000021_040 Hb_000002_490 Hb_000002_490 Hb_001584_370--Hb_000002_490 Hb_002249_120 Hb_002249_120 Hb_001584_370--Hb_002249_120 Hb_007426_150 Hb_007426_150 Hb_001584_370--Hb_007426_150 Hb_000933_020 Hb_000933_020 Hb_001584_370--Hb_000933_020 Hb_017295_010 Hb_017295_010 Hb_000392_370--Hb_017295_010 Hb_002750_050 Hb_002750_050 Hb_000392_370--Hb_002750_050 Hb_058999_030 Hb_058999_030 Hb_000392_370--Hb_058999_030 Hb_003430_090 Hb_003430_090 Hb_000392_370--Hb_003430_090 Hb_001396_280 Hb_001396_280 Hb_000392_370--Hb_001396_280 Hb_022250_110 Hb_022250_110 Hb_000021_040--Hb_022250_110 Hb_000037_110 Hb_000037_110 Hb_000021_040--Hb_000037_110 Hb_000768_190 Hb_000768_190 Hb_000021_040--Hb_000768_190 Hb_000343_190 Hb_000343_190 Hb_000021_040--Hb_000343_190 Hb_000209_070 Hb_000209_070 Hb_000021_040--Hb_000209_070 Hb_001473_090 Hb_001473_090 Hb_000021_040--Hb_001473_090 Hb_003126_100 Hb_003126_100 Hb_000002_490--Hb_003126_100 Hb_002311_070 Hb_002311_070 Hb_000002_490--Hb_002311_070 Hb_001050_010 Hb_001050_010 Hb_000002_490--Hb_001050_010 Hb_000002_490--Hb_000933_020 Hb_000718_070 Hb_000718_070 Hb_000002_490--Hb_000718_070 Hb_011618_080 Hb_011618_080 Hb_000002_490--Hb_011618_080 Hb_002681_170 Hb_002681_170 Hb_002249_120--Hb_002681_170 Hb_002307_350 Hb_002307_350 Hb_002249_120--Hb_002307_350 Hb_017895_020 Hb_017895_020 Hb_002249_120--Hb_017895_020 Hb_003436_050 Hb_003436_050 Hb_002249_120--Hb_003436_050 Hb_005408_020 Hb_005408_020 Hb_002249_120--Hb_005408_020 Hb_001900_120 Hb_001900_120 Hb_002249_120--Hb_001900_120 Hb_001195_560 Hb_001195_560 Hb_007426_150--Hb_001195_560 Hb_007426_150--Hb_000933_020 Hb_003018_130 Hb_003018_130 Hb_007426_150--Hb_003018_130 Hb_007426_150--Hb_011618_080 Hb_002273_120 Hb_002273_120 Hb_007426_150--Hb_002273_120 Hb_000429_220 Hb_000429_220 Hb_007426_150--Hb_000429_220 Hb_003605_130 Hb_003605_130 Hb_000933_020--Hb_003605_130 Hb_000123_090 Hb_000123_090 Hb_000933_020--Hb_000123_090 Hb_008864_110 Hb_008864_110 Hb_000933_020--Hb_008864_110 Hb_000933_020--Hb_001195_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.1352 14.7022 19.3872 26.1704 43.1318 33.966
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.02574 6.11899 17.6328 8.35324 14.0197

CAGE analysis