Hb_003740_010

Information

Type -
Description -
Location Contig3740: 31833-34303
Sequence    

Annotation

kegg
ID rcu:RCOM_0191370
description hypothetical protein
nr
ID XP_002532354.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T285
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0191370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003740_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_059301_010 0.2004440484 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
3 Hb_160233_020 0.2119686176 - - -
4 Hb_014919_020 0.2248576895 - - -
5 Hb_000816_010 0.2328919712 - - PREDICTED: uncharacterized protein At2g40430 isoform X2 [Jatropha curcas]
6 Hb_188411_010 0.2386346118 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
7 Hb_133605_010 0.2516387654 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
8 Hb_002447_020 0.2559319876 - - conserved hypothetical protein [Ricinus communis]
9 Hb_161023_010 0.2575970766 - - PREDICTED: uncharacterized protein LOC105639929 [Jatropha curcas]
10 Hb_001944_030 0.2633833044 - - hypothetical protein POPTR_0007s06520g [Populus trichocarpa]
11 Hb_000789_130 0.2654660956 - - PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
12 Hb_001214_170 0.277081612 - - pyruvate kinase family protein [Medicago truncatula]
13 Hb_114638_010 0.2772677765 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Jatropha curcas]
14 Hb_045481_010 0.2835078127 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
15 Hb_001138_030 0.2848585108 - - STRESS ENHANCED protein 1 [Populus trichocarpa]
16 Hb_005568_100 0.2890946058 - - vacuolar proton ATPase a3-like protein [Medicago truncatula]
17 Hb_129459_010 0.2962449552 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
18 Hb_115116_010 0.2963614798 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
19 Hb_000413_150 0.3002610586 - - PREDICTED: uncharacterized protein LOC103709996 [Phoenix dactylifera]
20 Hb_000189_430 0.3039257906 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_003740_010 Hb_003740_010 Hb_059301_010 Hb_059301_010 Hb_003740_010--Hb_059301_010 Hb_160233_020 Hb_160233_020 Hb_003740_010--Hb_160233_020 Hb_014919_020 Hb_014919_020 Hb_003740_010--Hb_014919_020 Hb_000816_010 Hb_000816_010 Hb_003740_010--Hb_000816_010 Hb_188411_010 Hb_188411_010 Hb_003740_010--Hb_188411_010 Hb_133605_010 Hb_133605_010 Hb_003740_010--Hb_133605_010 Hb_045481_010 Hb_045481_010 Hb_059301_010--Hb_045481_010 Hb_059301_010--Hb_014919_020 Hb_059301_010--Hb_000816_010 Hb_000123_100 Hb_000123_100 Hb_059301_010--Hb_000123_100 Hb_059301_010--Hb_160233_020 Hb_161023_010 Hb_161023_010 Hb_160233_020--Hb_161023_010 Hb_001214_170 Hb_001214_170 Hb_160233_020--Hb_001214_170 Hb_160233_020--Hb_188411_010 Hb_160233_020--Hb_014919_020 Hb_129459_010 Hb_129459_010 Hb_160233_020--Hb_129459_010 Hb_014919_020--Hb_161023_010 Hb_014919_020--Hb_000816_010 Hb_000413_150 Hb_000413_150 Hb_014919_020--Hb_000413_150 Hb_014919_020--Hb_188411_010 Hb_005568_100 Hb_005568_100 Hb_014919_020--Hb_005568_100 Hb_000789_130 Hb_000789_130 Hb_000816_010--Hb_000789_130 Hb_000984_250 Hb_000984_250 Hb_000816_010--Hb_000984_250 Hb_000816_010--Hb_045481_010 Hb_188411_010--Hb_161023_010 Hb_000406_010 Hb_000406_010 Hb_188411_010--Hb_000406_010 Hb_188411_010--Hb_133605_010 Hb_011903_010 Hb_011903_010 Hb_188411_010--Hb_011903_010 Hb_133605_010--Hb_000406_010 Hb_031403_030 Hb_031403_030 Hb_133605_010--Hb_031403_030 Hb_002570_010 Hb_002570_010 Hb_133605_010--Hb_002570_010 Hb_133605_010--Hb_161023_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.779929 0.302005 1.12694 0.820404 2.21211 0.0136533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0354767 0 0 0.111581 0

CAGE analysis