Hb_000123_100

Information

Type -
Description -
Location Contig123: 77738-78157
Sequence    

Annotation

kegg
ID tcc:TCM_024608
description hypothetical protein
nr
ID XP_007028705.1
description Uncharacterized protein TCM_024608 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061EXU4
description Uncharacterized protein OS=Theobroma cacao GN=TCM_024608 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000123_100 0.0 - - Uncharacterized protein TCM_024608 [Theobroma cacao]
2 Hb_113823_010 0.2452895488 - - -
3 Hb_059301_010 0.251165621 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
4 Hb_160233_020 0.2611063679 - - -
5 Hb_004800_050 0.2634066539 - - PREDICTED: uncharacterized protein LOC105643859 [Jatropha curcas]
6 Hb_004640_040 0.2671275767 - - -
7 Hb_001214_170 0.2683235959 - - pyruvate kinase family protein [Medicago truncatula]
8 Hb_134312_010 0.2715035215 - - PREDICTED: mitogen-activated protein kinase kinase kinase A-like [Populus euphratica]
9 Hb_000189_060 0.2715275796 - - PREDICTED: uncharacterized protein LOC105637477 [Jatropha curcas]
10 Hb_087008_010 0.2779258425 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
11 Hb_004524_070 0.2860700987 - - PREDICTED: uncharacterized protein LOC105634656 [Jatropha curcas]
12 Hb_000513_080 0.2891349874 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 43 [Jatropha curcas]
13 Hb_045481_010 0.2936501473 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
14 Hb_167508_010 0.2960794305 - - hypothetical protein POPTR_0001s27330g [Populus trichocarpa]
15 Hb_001944_030 0.2986490852 - - hypothetical protein POPTR_0007s06520g [Populus trichocarpa]
16 Hb_118346_010 0.2988177201 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
17 Hb_000003_140 0.3057868765 - - hypothetical protein glysoja_047034, partial [Glycine soja]
18 Hb_028848_030 0.3182026211 - - -
19 Hb_004970_040 0.3209071043 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
20 Hb_161023_010 0.3250925313 - - PREDICTED: uncharacterized protein LOC105639929 [Jatropha curcas]

Gene co-expression network

sample Hb_000123_100 Hb_000123_100 Hb_113823_010 Hb_113823_010 Hb_000123_100--Hb_113823_010 Hb_059301_010 Hb_059301_010 Hb_000123_100--Hb_059301_010 Hb_160233_020 Hb_160233_020 Hb_000123_100--Hb_160233_020 Hb_004800_050 Hb_004800_050 Hb_000123_100--Hb_004800_050 Hb_004640_040 Hb_004640_040 Hb_000123_100--Hb_004640_040 Hb_001214_170 Hb_001214_170 Hb_000123_100--Hb_001214_170 Hb_010979_010 Hb_010979_010 Hb_113823_010--Hb_010979_010 Hb_113823_010--Hb_001214_170 Hb_004524_070 Hb_004524_070 Hb_113823_010--Hb_004524_070 Hb_000146_060 Hb_000146_060 Hb_113823_010--Hb_000146_060 Hb_099990_030 Hb_099990_030 Hb_113823_010--Hb_099990_030 Hb_045481_010 Hb_045481_010 Hb_059301_010--Hb_045481_010 Hb_014919_020 Hb_014919_020 Hb_059301_010--Hb_014919_020 Hb_003740_010 Hb_003740_010 Hb_059301_010--Hb_003740_010 Hb_000816_010 Hb_000816_010 Hb_059301_010--Hb_000816_010 Hb_059301_010--Hb_160233_020 Hb_161023_010 Hb_161023_010 Hb_160233_020--Hb_161023_010 Hb_160233_020--Hb_001214_170 Hb_188411_010 Hb_188411_010 Hb_160233_020--Hb_188411_010 Hb_160233_020--Hb_003740_010 Hb_160233_020--Hb_014919_020 Hb_129459_010 Hb_129459_010 Hb_160233_020--Hb_129459_010 Hb_040948_020 Hb_040948_020 Hb_004800_050--Hb_040948_020 Hb_001638_100 Hb_001638_100 Hb_004800_050--Hb_001638_100 Hb_002345_080 Hb_002345_080 Hb_004800_050--Hb_002345_080 Hb_004607_100 Hb_004607_100 Hb_004800_050--Hb_004607_100 Hb_001501_040 Hb_001501_040 Hb_004800_050--Hb_001501_040 Hb_134312_010 Hb_134312_010 Hb_004640_040--Hb_134312_010 Hb_087008_010 Hb_087008_010 Hb_004640_040--Hb_087008_010 Hb_000189_060 Hb_000189_060 Hb_004640_040--Hb_000189_060 Hb_000513_080 Hb_000513_080 Hb_004640_040--Hb_000513_080 Hb_005892_070 Hb_005892_070 Hb_004640_040--Hb_005892_070 Hb_001214_170--Hb_161023_010 Hb_001944_030 Hb_001944_030 Hb_001214_170--Hb_001944_030 Hb_167508_010 Hb_167508_010 Hb_001214_170--Hb_167508_010 Hb_007926_010 Hb_007926_010 Hb_001214_170--Hb_007926_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.461387 0.268217 0.74792 0 0.885638 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis