Hb_160233_020

Information

Type -
Description -
Location Contig160233: 7840-9899
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_160233_020 0.0 - - -
2 Hb_161023_010 0.1227213236 - - PREDICTED: uncharacterized protein LOC105639929 [Jatropha curcas]
3 Hb_001214_170 0.1723543765 - - pyruvate kinase family protein [Medicago truncatula]
4 Hb_188411_010 0.1889125365 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
5 Hb_003740_010 0.2119686176 - - conserved hypothetical protein [Ricinus communis]
6 Hb_014919_020 0.2193655396 - - -
7 Hb_129459_010 0.2229829034 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
8 Hb_167508_010 0.2484767332 - - hypothetical protein POPTR_0001s27330g [Populus trichocarpa]
9 Hb_059301_010 0.2522548133 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
10 Hb_000123_100 0.2611063679 - - Uncharacterized protein TCM_024608 [Theobroma cacao]
11 Hb_001944_030 0.2624023812 - - hypothetical protein POPTR_0007s06520g [Populus trichocarpa]
12 Hb_133605_010 0.2655194415 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
13 Hb_061466_020 0.2656631271 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
14 Hb_000189_430 0.2686963336 - - unnamed protein product [Vitis vinifera]
15 Hb_032990_020 0.2869224608 - - conserved hypothetical protein [Ricinus communis]
16 Hb_118346_010 0.2887696536 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
17 Hb_005568_100 0.2946766035 - - vacuolar proton ATPase a3-like protein [Medicago truncatula]
18 Hb_135569_010 0.3001760743 - - PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]
19 Hb_004970_040 0.3029691083 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
20 Hb_003096_020 0.3043183578 - - -

Gene co-expression network

sample Hb_160233_020 Hb_160233_020 Hb_161023_010 Hb_161023_010 Hb_160233_020--Hb_161023_010 Hb_001214_170 Hb_001214_170 Hb_160233_020--Hb_001214_170 Hb_188411_010 Hb_188411_010 Hb_160233_020--Hb_188411_010 Hb_003740_010 Hb_003740_010 Hb_160233_020--Hb_003740_010 Hb_014919_020 Hb_014919_020 Hb_160233_020--Hb_014919_020 Hb_129459_010 Hb_129459_010 Hb_160233_020--Hb_129459_010 Hb_161023_010--Hb_188411_010 Hb_161023_010--Hb_001214_170 Hb_161023_010--Hb_014919_020 Hb_061466_020 Hb_061466_020 Hb_161023_010--Hb_061466_020 Hb_167508_010 Hb_167508_010 Hb_161023_010--Hb_167508_010 Hb_001944_030 Hb_001944_030 Hb_001214_170--Hb_001944_030 Hb_001214_170--Hb_167508_010 Hb_007926_010 Hb_007926_010 Hb_001214_170--Hb_007926_010 Hb_113823_010 Hb_113823_010 Hb_001214_170--Hb_113823_010 Hb_000406_010 Hb_000406_010 Hb_188411_010--Hb_000406_010 Hb_133605_010 Hb_133605_010 Hb_188411_010--Hb_133605_010 Hb_188411_010--Hb_014919_020 Hb_011903_010 Hb_011903_010 Hb_188411_010--Hb_011903_010 Hb_059301_010 Hb_059301_010 Hb_003740_010--Hb_059301_010 Hb_003740_010--Hb_014919_020 Hb_000816_010 Hb_000816_010 Hb_003740_010--Hb_000816_010 Hb_003740_010--Hb_188411_010 Hb_003740_010--Hb_133605_010 Hb_014919_020--Hb_000816_010 Hb_000413_150 Hb_000413_150 Hb_014919_020--Hb_000413_150 Hb_014919_020--Hb_059301_010 Hb_005568_100 Hb_005568_100 Hb_014919_020--Hb_005568_100 Hb_001138_030 Hb_001138_030 Hb_129459_010--Hb_001138_030 Hb_011161_030 Hb_011161_030 Hb_129459_010--Hb_011161_030 Hb_129459_010--Hb_061466_020 Hb_000189_430 Hb_000189_430 Hb_129459_010--Hb_000189_430 Hb_129459_010--Hb_167508_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.167869 0.190762 0.240485 0.117413 0.354656 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis