Hb_007926_010

Information

Type -
Description -
Location Contig7926: 5187-8083
Sequence    

Annotation

kegg
ID rcu:RCOM_0225670
description catalytic, putative
nr
ID XP_006481559.1
description PREDICTED: UPF0554 protein C2orf43 homolog isoform X4 [Citrus sinensis]
swissprot
ID -
description -
trembl
ID B9SVY9
description Catalytic, putative OS=Ricinus communis GN=RCOM_0225670 PE=4 SV=1
Gene Ontology
ID GO:0005623
description upf0554 protein c2orf43 homolog isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007926_010 0.0 - - PREDICTED: UPF0554 protein C2orf43 homolog isoform X4 [Citrus sinensis]
2 Hb_001214_170 0.223764006 - - pyruvate kinase family protein [Medicago truncatula]
3 Hb_009189_040 0.2243424167 - - PREDICTED: uncharacterized protein LOC104446949 [Eucalyptus grandis]
4 Hb_007805_020 0.23155465 - - -
5 Hb_001916_060 0.2367596607 - - PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X2 [Jatropha curcas]
6 Hb_003222_010 0.2436470829 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
7 Hb_054436_010 0.2479837204 - - PREDICTED: uncharacterized protein LOC105638666 [Jatropha curcas]
8 Hb_005517_010 0.2520243952 - - Chorismate mutase, chloroplast precursor, putative [Ricinus communis]
9 Hb_005535_060 0.256870634 - - -
10 Hb_004330_030 0.2624397463 - - -
11 Hb_004007_150 0.2641575606 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 4 [Jatropha curcas]
12 Hb_000735_010 0.2645651858 - - -
13 Hb_002783_050 0.2676818557 - - zinc finger protein, putative [Ricinus communis]
14 Hb_001935_190 0.2683299881 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
15 Hb_000214_090 0.2702423967 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
16 Hb_001944_030 0.2714813967 - - hypothetical protein POPTR_0007s06520g [Populus trichocarpa]
17 Hb_140595_010 0.2721847078 - - -
18 Hb_000146_060 0.2734814202 - - -
19 Hb_012107_070 0.2756832858 - - -
20 Hb_001195_150 0.2779067172 transcription factor TF Family: MYB-related myb family transcription factor family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_007926_010 Hb_007926_010 Hb_001214_170 Hb_001214_170 Hb_007926_010--Hb_001214_170 Hb_009189_040 Hb_009189_040 Hb_007926_010--Hb_009189_040 Hb_007805_020 Hb_007805_020 Hb_007926_010--Hb_007805_020 Hb_001916_060 Hb_001916_060 Hb_007926_010--Hb_001916_060 Hb_003222_010 Hb_003222_010 Hb_007926_010--Hb_003222_010 Hb_054436_010 Hb_054436_010 Hb_007926_010--Hb_054436_010 Hb_161023_010 Hb_161023_010 Hb_001214_170--Hb_161023_010 Hb_160233_020 Hb_160233_020 Hb_001214_170--Hb_160233_020 Hb_001944_030 Hb_001944_030 Hb_001214_170--Hb_001944_030 Hb_167508_010 Hb_167508_010 Hb_001214_170--Hb_167508_010 Hb_113823_010 Hb_113823_010 Hb_001214_170--Hb_113823_010 Hb_002542_120 Hb_002542_120 Hb_009189_040--Hb_002542_120 Hb_015928_020 Hb_015928_020 Hb_009189_040--Hb_015928_020 Hb_179679_010 Hb_179679_010 Hb_009189_040--Hb_179679_010 Hb_009189_040--Hb_003222_010 Hb_002196_010 Hb_002196_010 Hb_009189_040--Hb_002196_010 Hb_068347_010 Hb_068347_010 Hb_007805_020--Hb_068347_010 Hb_010979_010 Hb_010979_010 Hb_007805_020--Hb_010979_010 Hb_004330_030 Hb_004330_030 Hb_007805_020--Hb_004330_030 Hb_171108_010 Hb_171108_010 Hb_007805_020--Hb_171108_010 Hb_010770_010 Hb_010770_010 Hb_007805_020--Hb_010770_010 Hb_101020_010 Hb_101020_010 Hb_001916_060--Hb_101020_010 Hb_114984_010 Hb_114984_010 Hb_001916_060--Hb_114984_010 Hb_001195_150 Hb_001195_150 Hb_001916_060--Hb_001195_150 Hb_128376_010 Hb_128376_010 Hb_001916_060--Hb_128376_010 Hb_005517_010 Hb_005517_010 Hb_001916_060--Hb_005517_010 Hb_001935_190 Hb_001935_190 Hb_001916_060--Hb_001935_190 Hb_009189_030 Hb_009189_030 Hb_003222_010--Hb_009189_030 Hb_001276_010 Hb_001276_010 Hb_003222_010--Hb_001276_010 Hb_003222_010--Hb_001935_190 Hb_004631_160 Hb_004631_160 Hb_003222_010--Hb_004631_160 Hb_120662_010 Hb_120662_010 Hb_003222_010--Hb_120662_010 Hb_003222_010--Hb_001916_060 Hb_005527_080 Hb_005527_080 Hb_054436_010--Hb_005527_080 Hb_149838_010 Hb_149838_010 Hb_054436_010--Hb_149838_010 Hb_054436_010--Hb_114984_010 Hb_054436_010--Hb_005517_010 Hb_002783_020 Hb_002783_020 Hb_054436_010--Hb_002783_020 Hb_004657_090 Hb_004657_090 Hb_054436_010--Hb_004657_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.76142 0.710454 0.349937 0.377424 1.41102 0.433159
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0867702 0 0 0 0

CAGE analysis