Hb_004330_030

Information

Type -
Description -
Location Contig4330: 44473-45192
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004330_030 0.0 - - -
2 Hb_001944_030 0.2368802093 - - hypothetical protein POPTR_0007s06520g [Populus trichocarpa]
3 Hb_000146_060 0.239800598 - - -
4 Hb_001214_170 0.2407950623 - - pyruvate kinase family protein [Medicago truncatula]
5 Hb_005608_010 0.2501961907 - - PREDICTED: U-box domain-containing protein 40 [Jatropha curcas]
6 Hb_007805_020 0.2505872745 - - -
7 Hb_118346_010 0.2621038155 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
8 Hb_007926_010 0.2624397463 - - PREDICTED: UPF0554 protein C2orf43 homolog isoform X4 [Citrus sinensis]
9 Hb_171108_010 0.2625972347 - - -
10 Hb_004899_280 0.2814609034 - - -
11 Hb_005975_020 0.2827610286 - - -
12 Hb_005535_060 0.2860153712 - - -
13 Hb_002783_050 0.291306707 - - zinc finger protein, putative [Ricinus communis]
14 Hb_003096_040 0.2938999325 transcription factor TF Family: HB hypothetical protein POPTR_0005s07290g [Populus trichocarpa]
15 Hb_004007_150 0.2944688245 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 4 [Jatropha curcas]
16 Hb_002232_280 0.2969801931 - - PREDICTED: pleiotropic drug resistance protein 1-like isoform X6 [Jatropha curcas]
17 Hb_131949_010 0.3004860219 - - PREDICTED: uncharacterized protein LOC104227863, partial [Nicotiana sylvestris]
18 Hb_003362_060 0.3020058311 - - -
19 Hb_009189_040 0.3035984939 - - PREDICTED: uncharacterized protein LOC104446949 [Eucalyptus grandis]
20 Hb_000260_370 0.3041965708 - - protein phosphatase-1, putative [Ricinus communis]

Gene co-expression network

sample Hb_004330_030 Hb_004330_030 Hb_001944_030 Hb_001944_030 Hb_004330_030--Hb_001944_030 Hb_000146_060 Hb_000146_060 Hb_004330_030--Hb_000146_060 Hb_001214_170 Hb_001214_170 Hb_004330_030--Hb_001214_170 Hb_005608_010 Hb_005608_010 Hb_004330_030--Hb_005608_010 Hb_007805_020 Hb_007805_020 Hb_004330_030--Hb_007805_020 Hb_118346_010 Hb_118346_010 Hb_004330_030--Hb_118346_010 Hb_001944_030--Hb_001214_170 Hb_000260_370 Hb_000260_370 Hb_001944_030--Hb_000260_370 Hb_007645_120 Hb_007645_120 Hb_001944_030--Hb_007645_120 Hb_005535_060 Hb_005535_060 Hb_001944_030--Hb_005535_060 Hb_000189_430 Hb_000189_430 Hb_001944_030--Hb_000189_430 Hb_004939_020 Hb_004939_020 Hb_000146_060--Hb_004939_020 Hb_012107_070 Hb_012107_070 Hb_000146_060--Hb_012107_070 Hb_003362_060 Hb_003362_060 Hb_000146_060--Hb_003362_060 Hb_000146_060--Hb_001214_170 Hb_113823_010 Hb_113823_010 Hb_000146_060--Hb_113823_010 Hb_161023_010 Hb_161023_010 Hb_001214_170--Hb_161023_010 Hb_160233_020 Hb_160233_020 Hb_001214_170--Hb_160233_020 Hb_167508_010 Hb_167508_010 Hb_001214_170--Hb_167508_010 Hb_007926_010 Hb_007926_010 Hb_001214_170--Hb_007926_010 Hb_001214_170--Hb_113823_010 Hb_005608_010--Hb_000260_370 Hb_007192_060 Hb_007192_060 Hb_005608_010--Hb_007192_060 Hb_000062_030 Hb_000062_030 Hb_005608_010--Hb_000062_030 Hb_007044_010 Hb_007044_010 Hb_005608_010--Hb_007044_010 Hb_008616_030 Hb_008616_030 Hb_005608_010--Hb_008616_030 Hb_031527_070 Hb_031527_070 Hb_005608_010--Hb_031527_070 Hb_068347_010 Hb_068347_010 Hb_007805_020--Hb_068347_010 Hb_010979_010 Hb_010979_010 Hb_007805_020--Hb_010979_010 Hb_007805_020--Hb_007926_010 Hb_171108_010 Hb_171108_010 Hb_007805_020--Hb_171108_010 Hb_010770_010 Hb_010770_010 Hb_007805_020--Hb_010770_010 Hb_014919_020 Hb_014919_020 Hb_118346_010--Hb_014919_020 Hb_059301_010 Hb_059301_010 Hb_118346_010--Hb_059301_010 Hb_118346_010--Hb_001944_030 Hb_118346_010--Hb_001214_170 Hb_118346_010--Hb_113823_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.16382 6.49968 1.48263 0.886655 10.2224 0.785339
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.372416 0 1.56442 0

CAGE analysis