Hb_008616_030

Information

Type transcription factor
Description TF Family: NF-YA
Location Contig8616: 43904-48886
Sequence    

Annotation

kegg
ID pop:POPTR_0016s06860g
description POPTRDRAFT_576479, POPTRDRAFT_576480; hypothetical protein
nr
ID XP_012074293.1
description PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
swissprot
ID Q8LFU0
description Nuclear transcription factor Y subunit A-10 OS=Arabidopsis thaliana GN=NFYA10 PE=2 SV=2
trembl
ID A0A067KM65
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08742 PE=4 SV=1
Gene Ontology
ID GO:0003700
description nuclear transcription factor y subunit a-10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60826: 44710-44859 , PASA_asmbl_60827: 47565-47986 , PASA_asmbl_60828: 46852-48664
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008616_030 0.0 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
2 Hb_007044_010 0.1461026265 - - -
3 Hb_011639_010 0.1541721623 - - -
4 Hb_004631_160 0.1574551978 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
5 Hb_012395_080 0.1763825408 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19890 [Jatropha curcas]
6 Hb_007223_010 0.1943508303 - - conserved hypothetical protein [Ricinus communis]
7 Hb_119886_040 0.2007029234 - - -
8 Hb_000201_040 0.2031383417 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
9 Hb_006745_020 0.2093313031 - - PREDICTED: 22.0 kDa class IV heat shock protein [Jatropha curcas]
10 Hb_144550_020 0.2150538 - - -
11 Hb_000001_160 0.2177454507 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X2 [Jatropha curcas]
12 Hb_008556_020 0.2189119879 - - -
13 Hb_003492_010 0.2197249418 - - DREPP plasma membrane polypeptide family protein [Populus trichocarpa]
14 Hb_000330_160 0.2210002919 - - hypothetical protein JCGZ_04462 [Jatropha curcas]
15 Hb_045870_010 0.2218055531 - - -
16 Hb_030627_040 0.2221012297 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
17 Hb_031069_020 0.2235204787 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 3-like [Jatropha curcas]
18 Hb_003043_060 0.2236221892 - - -
19 Hb_002311_230 0.2279274285 - - -
20 Hb_005608_010 0.2305440894 - - PREDICTED: U-box domain-containing protein 40 [Jatropha curcas]

Gene co-expression network

sample Hb_008616_030 Hb_008616_030 Hb_007044_010 Hb_007044_010 Hb_008616_030--Hb_007044_010 Hb_011639_010 Hb_011639_010 Hb_008616_030--Hb_011639_010 Hb_004631_160 Hb_004631_160 Hb_008616_030--Hb_004631_160 Hb_012395_080 Hb_012395_080 Hb_008616_030--Hb_012395_080 Hb_007223_010 Hb_007223_010 Hb_008616_030--Hb_007223_010 Hb_119886_040 Hb_119886_040 Hb_008616_030--Hb_119886_040 Hb_007044_010--Hb_011639_010 Hb_002311_230 Hb_002311_230 Hb_007044_010--Hb_002311_230 Hb_007044_010--Hb_004631_160 Hb_001522_010 Hb_001522_010 Hb_007044_010--Hb_001522_010 Hb_031073_010 Hb_031073_010 Hb_007044_010--Hb_031073_010 Hb_011639_010--Hb_004631_160 Hb_011798_040 Hb_011798_040 Hb_011639_010--Hb_011798_040 Hb_011639_010--Hb_001522_010 Hb_000483_180 Hb_000483_180 Hb_011639_010--Hb_000483_180 Hb_003398_010 Hb_003398_010 Hb_004631_160--Hb_003398_010 Hb_000617_040 Hb_000617_040 Hb_004631_160--Hb_000617_040 Hb_000205_070 Hb_000205_070 Hb_004631_160--Hb_000205_070 Hb_002370_040 Hb_002370_040 Hb_012395_080--Hb_002370_040 Hb_144550_020 Hb_144550_020 Hb_012395_080--Hb_144550_020 Hb_007481_030 Hb_007481_030 Hb_012395_080--Hb_007481_030 Hb_000136_190 Hb_000136_190 Hb_012395_080--Hb_000136_190 Hb_045870_010 Hb_045870_010 Hb_012395_080--Hb_045870_010 Hb_007223_010--Hb_007481_030 Hb_007223_010--Hb_002370_040 Hb_000201_040 Hb_000201_040 Hb_007223_010--Hb_000201_040 Hb_000181_360 Hb_000181_360 Hb_007223_010--Hb_000181_360 Hb_002805_170 Hb_002805_170 Hb_007223_010--Hb_002805_170 Hb_000265_250 Hb_000265_250 Hb_007223_010--Hb_000265_250 Hb_119886_040--Hb_000483_180 Hb_008556_020 Hb_008556_020 Hb_119886_040--Hb_008556_020 Hb_119886_040--Hb_002311_230 Hb_119886_040--Hb_007223_010 Hb_119886_040--Hb_011639_010 Hb_005962_010 Hb_005962_010 Hb_119886_040--Hb_005962_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.9487 45.0987 6.19985 12.5329 84.6132 59.4981
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.161046 0.126708 0.159452 13.6918 14.6098

CAGE analysis