Hb_000617_040

Information

Type -
Description -
Location Contig617: 23653-26021
Sequence    

Annotation

kegg
ID gmx:100814324
description uncharacterized LOC100814324
nr
ID XP_012088987.1
description PREDICTED: uncharacterized protein LOC105647487 isoform X2 [Jatropha curcas]
swissprot
ID Q05349
description Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1
trembl
ID K7MZV6
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0009741
description dormancy auxin associated family protein isoform 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51253: 23630-26026 , PASA_asmbl_51254: 23630-24880 , PASA_asmbl_51255: 23665-26024 , PASA_asmbl_51256: 23630-26002 , PASA_asmbl_51257: 24993-25354
cDNA
(Sanger)
(ID:Location)		 002_J21.ab1: 23653-26026 , 004_G08.ab1: 23665-26024 , 004_K07.ab1: 23663-24877 , 009_K15.ab1: 23663-24877 , 017_I23.ab1: 25381-26028 , 030_A02.ab1: 23775-26024 , 039_O09.ab1: 23719-26024 , 044_I05.ab1: 23696-26024 , 050_B07.ab1: 23674-26024 , 050_O06.ab1: 23941-24798

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000617_040 0.0 - - PREDICTED: uncharacterized protein LOC105647487 isoform X2 [Jatropha curcas]
2 Hb_001247_140 0.1493129542 - - -
3 Hb_003398_010 0.15089202 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
4 Hb_031089_030 0.1569740232 - - ubiquitin-conjugating enzyme E2 28 [Arabidopsis thaliana]
5 Hb_004631_160 0.1635032592 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
6 Hb_007257_050 0.1638441176 - - protein with unknown function [Ricinus communis]
7 Hb_041237_010 0.1655462123 - - conserved hypothetical protein [Ricinus communis]
8 Hb_010584_010 0.1689405329 - - PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]
9 Hb_003299_080 0.1710119169 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
10 Hb_000003_390 0.1802431151 - - hypothetical protein POPTR_0003s20040g [Populus trichocarpa]
11 Hb_181975_010 0.1898503272 - - PREDICTED: probable disease resistance protein At4g27220 [Populus euphratica]
12 Hb_001907_060 0.1967534076 - - PREDICTED: structural maintenance of chromosomes protein 5 [Jatropha curcas]
13 Hb_000375_370 0.1974417143 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
14 Hb_001935_190 0.1978838639 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
15 Hb_002609_010 0.1979893107 - - PREDICTED: uncharacterized protein LOC105630866 [Jatropha curcas]
16 Hb_000189_420 0.2012346361 - - PREDICTED: uncharacterized protein LOC105647665 [Jatropha curcas]
17 Hb_006501_020 0.2013292391 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
18 Hb_007978_020 0.2052737148 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
19 Hb_000792_110 0.2069786922 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
20 Hb_007680_020 0.2078450312 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000617_040 Hb_000617_040 Hb_001247_140 Hb_001247_140 Hb_000617_040--Hb_001247_140 Hb_003398_010 Hb_003398_010 Hb_000617_040--Hb_003398_010 Hb_031089_030 Hb_031089_030 Hb_000617_040--Hb_031089_030 Hb_004631_160 Hb_004631_160 Hb_000617_040--Hb_004631_160 Hb_007257_050 Hb_007257_050 Hb_000617_040--Hb_007257_050 Hb_041237_010 Hb_041237_010 Hb_000617_040--Hb_041237_010 Hb_003299_080 Hb_003299_080 Hb_001247_140--Hb_003299_080 Hb_000365_060 Hb_000365_060 Hb_001247_140--Hb_000365_060 Hb_013753_010 Hb_013753_010 Hb_001247_140--Hb_013753_010 Hb_000375_370 Hb_000375_370 Hb_001247_140--Hb_000375_370 Hb_001247_140--Hb_031089_030 Hb_005122_060 Hb_005122_060 Hb_001247_140--Hb_005122_060 Hb_003398_010--Hb_041237_010 Hb_003398_010--Hb_004631_160 Hb_003398_010--Hb_003299_080 Hb_000212_130 Hb_000212_130 Hb_003398_010--Hb_000212_130 Hb_003398_010--Hb_031089_030 Hb_031089_030--Hb_007257_050 Hb_031089_030--Hb_003299_080 Hb_084429_010 Hb_084429_010 Hb_031089_030--Hb_084429_010 Hb_001396_260 Hb_001396_260 Hb_031089_030--Hb_001396_260 Hb_031089_030--Hb_000375_370 Hb_008616_030 Hb_008616_030 Hb_004631_160--Hb_008616_030 Hb_007044_010 Hb_007044_010 Hb_004631_160--Hb_007044_010 Hb_011639_010 Hb_011639_010 Hb_004631_160--Hb_011639_010 Hb_000205_070 Hb_000205_070 Hb_004631_160--Hb_000205_070 Hb_010584_010 Hb_010584_010 Hb_007257_050--Hb_010584_010 Hb_009028_030 Hb_009028_030 Hb_007257_050--Hb_009028_030 Hb_000265_250 Hb_000265_250 Hb_007257_050--Hb_000265_250 Hb_003349_010 Hb_003349_010 Hb_007257_050--Hb_003349_010 Hb_003157_010 Hb_003157_010 Hb_007257_050--Hb_003157_010 Hb_000014_130 Hb_000014_130 Hb_041237_010--Hb_000014_130 Hb_000413_170 Hb_000413_170 Hb_041237_010--Hb_000413_170 Hb_007978_020 Hb_007978_020 Hb_041237_010--Hb_007978_020 Hb_041237_010--Hb_003299_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
942.957 837.257 17.1919 208.487 805.619 1150.82
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
145.68 20.6645 17.6046 172.278 34.4879

CAGE analysis