Hb_011639_010

Information

Type -
Description -
Location Contig11639: 2112-3270
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011639_010 0.0 - - -
2 Hb_007044_010 0.1215033229 - - -
3 Hb_008616_030 0.1541721623 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
4 Hb_004631_160 0.1771114963 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
5 Hb_011798_040 0.1771803845 - - hypothetical protein ZEAMMB73_778895 [Zea mays]
6 Hb_001522_010 0.1775957104 - - PREDICTED: nucleolar protein 14 isoform X1 [Jatropha curcas]
7 Hb_000483_180 0.1779727576 - - -
8 Hb_002311_230 0.1786207432 - - -
9 Hb_119886_040 0.1808911296 - - -
10 Hb_007223_010 0.1857804344 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005843_040 0.1872319899 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]
12 Hb_003656_120 0.1928132701 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-3-like [Jatropha curcas]
13 Hb_057451_010 0.1946719437 - - PREDICTED: uncharacterized protein LOC105635588 [Jatropha curcas]
14 Hb_002188_090 0.1963338959 - - PREDICTED: pre-mRNA-processing protein 40A isoform X1 [Jatropha curcas]
15 Hb_005510_010 0.1979638613 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
16 Hb_000212_130 0.1983630151 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006816_120 0.1994167141 - - Nicotianamine synthase, putative [Ricinus communis]
18 Hb_000504_090 0.2034978132 - - PREDICTED: titin isoform X10 [Jatropha curcas]
19 Hb_003236_010 0.203739837 - - PREDICTED: uncharacterized protein LOC105635957 [Jatropha curcas]
20 Hb_001534_070 0.2053193102 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Eucalyptus grandis]

Gene co-expression network

sample Hb_011639_010 Hb_011639_010 Hb_007044_010 Hb_007044_010 Hb_011639_010--Hb_007044_010 Hb_008616_030 Hb_008616_030 Hb_011639_010--Hb_008616_030 Hb_004631_160 Hb_004631_160 Hb_011639_010--Hb_004631_160 Hb_011798_040 Hb_011798_040 Hb_011639_010--Hb_011798_040 Hb_001522_010 Hb_001522_010 Hb_011639_010--Hb_001522_010 Hb_000483_180 Hb_000483_180 Hb_011639_010--Hb_000483_180 Hb_007044_010--Hb_008616_030 Hb_002311_230 Hb_002311_230 Hb_007044_010--Hb_002311_230 Hb_007044_010--Hb_004631_160 Hb_007044_010--Hb_001522_010 Hb_031073_010 Hb_031073_010 Hb_007044_010--Hb_031073_010 Hb_008616_030--Hb_004631_160 Hb_012395_080 Hb_012395_080 Hb_008616_030--Hb_012395_080 Hb_007223_010 Hb_007223_010 Hb_008616_030--Hb_007223_010 Hb_119886_040 Hb_119886_040 Hb_008616_030--Hb_119886_040 Hb_003398_010 Hb_003398_010 Hb_004631_160--Hb_003398_010 Hb_000617_040 Hb_000617_040 Hb_004631_160--Hb_000617_040 Hb_000205_070 Hb_000205_070 Hb_004631_160--Hb_000205_070 Hb_005843_040 Hb_005843_040 Hb_011798_040--Hb_005843_040 Hb_001141_460 Hb_001141_460 Hb_011798_040--Hb_001141_460 Hb_000640_200 Hb_000640_200 Hb_011798_040--Hb_000640_200 Hb_057451_010 Hb_057451_010 Hb_011798_040--Hb_057451_010 Hb_003236_010 Hb_003236_010 Hb_011798_040--Hb_003236_010 Hb_003157_010 Hb_003157_010 Hb_011798_040--Hb_003157_010 Hb_002188_090 Hb_002188_090 Hb_001522_010--Hb_002188_090 Hb_006829_090 Hb_006829_090 Hb_001522_010--Hb_006829_090 Hb_078477_040 Hb_078477_040 Hb_001522_010--Hb_078477_040 Hb_005462_020 Hb_005462_020 Hb_001522_010--Hb_005462_020 Hb_001009_290 Hb_001009_290 Hb_001522_010--Hb_001009_290 Hb_000313_340 Hb_000313_340 Hb_001522_010--Hb_000313_340 Hb_000483_180--Hb_119886_040 Hb_009558_040 Hb_009558_040 Hb_000483_180--Hb_009558_040 Hb_000488_010 Hb_000488_010 Hb_000483_180--Hb_000488_010 Hb_000483_180--Hb_002311_230 Hb_000024_070 Hb_000024_070 Hb_000483_180--Hb_000024_070 Hb_000181_360 Hb_000181_360 Hb_000483_180--Hb_000181_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.07439 7.04539 0.958997 0.389193 13.4915 8.77803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.186704 0.733236 0.47431 2.87233 2.08535

CAGE analysis