Hb_012395_080

Information

Type -
Description -
Location Contig12395: 36553-37868
Sequence    

Annotation

kegg
ID cit:102609250
description pentatricopeptide repeat-containing protein At4g19890-like
nr
ID XP_012069900.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g19890 [Jatropha curcas]
swissprot
ID P0C8Q3
description Pentatricopeptide repeat-containing protein At4g19890 OS=Arabidopsis thaliana GN=At4g19890 PE=2 SV=1
trembl
ID A0A067KW05
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02379 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012395_080 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19890 [Jatropha curcas]
2 Hb_002370_040 0.145607366 - - PREDICTED: uncharacterized protein LOC105644336 [Jatropha curcas]
3 Hb_144550_020 0.1573619249 - - -
4 Hb_007481_030 0.1720440284 - - PREDICTED: uncharacterized protein LOC105628433 [Jatropha curcas]
5 Hb_008616_030 0.1763825408 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
6 Hb_000136_190 0.1793276848 - - PREDICTED: protein-S-isoprenylcysteine O-methyltransferase A-like isoform X1 [Jatropha curcas]
7 Hb_045870_010 0.1817268223 - - -
8 Hb_007223_010 0.1874456802 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000330_160 0.1894698943 - - hypothetical protein JCGZ_04462 [Jatropha curcas]
10 Hb_003814_030 0.1912147416 - - PREDICTED: WAT1-related protein At5g47470-like isoform X2 [Jatropha curcas]
11 Hb_005144_030 0.1970683105 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
12 Hb_006269_040 0.204103597 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
13 Hb_003854_020 0.2055625811 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
14 Hb_003492_010 0.2185126604 - - DREPP plasma membrane polypeptide family protein [Populus trichocarpa]
15 Hb_003895_030 0.2286668689 - - -
16 Hb_000062_030 0.236099942 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X2 [Jatropha curcas]
17 Hb_143960_010 0.2388870807 - - -
18 Hb_003157_030 0.2401307656 - - PREDICTED: exocyst complex component EXO70A1-like [Nicotiana sylvestris]
19 Hb_002742_080 0.2406997792 - - unknown [Populus trichocarpa]
20 Hb_031069_020 0.241884161 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_012395_080 Hb_012395_080 Hb_002370_040 Hb_002370_040 Hb_012395_080--Hb_002370_040 Hb_144550_020 Hb_144550_020 Hb_012395_080--Hb_144550_020 Hb_007481_030 Hb_007481_030 Hb_012395_080--Hb_007481_030 Hb_008616_030 Hb_008616_030 Hb_012395_080--Hb_008616_030 Hb_000136_190 Hb_000136_190 Hb_012395_080--Hb_000136_190 Hb_045870_010 Hb_045870_010 Hb_012395_080--Hb_045870_010 Hb_002370_040--Hb_007481_030 Hb_003895_030 Hb_003895_030 Hb_002370_040--Hb_003895_030 Hb_002370_040--Hb_000136_190 Hb_007223_010 Hb_007223_010 Hb_002370_040--Hb_007223_010 Hb_100525_010 Hb_100525_010 Hb_002370_040--Hb_100525_010 Hb_006269_040 Hb_006269_040 Hb_144550_020--Hb_006269_040 Hb_144550_020--Hb_000136_190 Hb_144550_020--Hb_002370_040 Hb_003854_020 Hb_003854_020 Hb_144550_020--Hb_003854_020 Hb_000330_160 Hb_000330_160 Hb_144550_020--Hb_000330_160 Hb_143960_010 Hb_143960_010 Hb_007481_030--Hb_143960_010 Hb_007481_030--Hb_007223_010 Hb_167381_020 Hb_167381_020 Hb_007481_030--Hb_167381_020 Hb_000120_520 Hb_000120_520 Hb_007481_030--Hb_000120_520 Hb_002997_160 Hb_002997_160 Hb_007481_030--Hb_002997_160 Hb_007044_010 Hb_007044_010 Hb_008616_030--Hb_007044_010 Hb_011639_010 Hb_011639_010 Hb_008616_030--Hb_011639_010 Hb_004631_160 Hb_004631_160 Hb_008616_030--Hb_004631_160 Hb_008616_030--Hb_007223_010 Hb_119886_040 Hb_119886_040 Hb_008616_030--Hb_119886_040 Hb_003814_030 Hb_003814_030 Hb_000136_190--Hb_003814_030 Hb_000136_190--Hb_000330_160 Hb_000062_060 Hb_000062_060 Hb_000136_190--Hb_000062_060 Hb_001508_020 Hb_001508_020 Hb_000136_190--Hb_001508_020 Hb_004657_090 Hb_004657_090 Hb_000136_190--Hb_004657_090 Hb_004884_030 Hb_004884_030 Hb_045870_010--Hb_004884_030 Hb_045870_010--Hb_119886_040 Hb_004884_020 Hb_004884_020 Hb_045870_010--Hb_004884_020 Hb_012528_030 Hb_012528_030 Hb_045870_010--Hb_012528_030 Hb_027380_230 Hb_027380_230 Hb_045870_010--Hb_027380_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.594 1.24915 0.511488 0.499091 1.29229 1.92037
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.433837 0.331512

CAGE analysis