Hb_100525_010

Information

Type -
Description -
Location Contig100525: 269-781
Sequence    

Annotation

kegg
ID pop:POPTR_0006s01550g
description POPTRDRAFT_560178; hypothetical protein
nr
ID XP_011008978.1
description PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
swissprot
ID Q38834
description Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2
trembl
ID B9HCU2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01550g PE=4 SV=1
Gene Ontology
ID GO:0032550
description disease resistance rpp13-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_100525_010 0.0 - - PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
2 Hb_097646_010 0.1176646192 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
3 Hb_000571_150 0.1570308767 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
4 Hb_003895_030 0.1623204093 - - -
5 Hb_002742_080 0.1688694315 - - unknown [Populus trichocarpa]
6 Hb_002370_040 0.171811554 - - PREDICTED: uncharacterized protein LOC105644336 [Jatropha curcas]
7 Hb_003376_260 0.1718405309 - - PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]
8 Hb_024698_010 0.177080898 - - PREDICTED: RING-H2 finger protein ATL46 [Jatropha curcas]
9 Hb_004935_080 0.1777917728 - - AT3g13060/MGH6_17 [Arabidopsis thaliana]
10 Hb_132840_100 0.1808068285 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 4 [Jatropha curcas]
11 Hb_000979_240 0.1818031608 transcription factor TF Family: GRAS PREDICTED: DELLA protein GAIP-B [Jatropha curcas]
12 Hb_005843_160 0.1847534021 - - PREDICTED: uncharacterized protein LOC105112024 [Populus euphratica]
13 Hb_000608_260 0.1885825274 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
14 Hb_002320_070 0.1905082956 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004657_090 0.1930433254 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]
16 Hb_006420_020 0.1935893718 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
17 Hb_000201_040 0.1936448508 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
18 Hb_001493_080 0.194740114 - - PREDICTED: RING-H2 finger protein ATL3-like [Jatropha curcas]
19 Hb_003001_040 0.1949403971 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
20 Hb_002066_080 0.1991068789 - - PREDICTED: protein CYPRO4 [Jatropha curcas]

Gene co-expression network

sample Hb_100525_010 Hb_100525_010 Hb_097646_010 Hb_097646_010 Hb_100525_010--Hb_097646_010 Hb_000571_150 Hb_000571_150 Hb_100525_010--Hb_000571_150 Hb_003895_030 Hb_003895_030 Hb_100525_010--Hb_003895_030 Hb_002742_080 Hb_002742_080 Hb_100525_010--Hb_002742_080 Hb_002370_040 Hb_002370_040 Hb_100525_010--Hb_002370_040 Hb_003376_260 Hb_003376_260 Hb_100525_010--Hb_003376_260 Hb_024698_010 Hb_024698_010 Hb_097646_010--Hb_024698_010 Hb_003001_040 Hb_003001_040 Hb_097646_010--Hb_003001_040 Hb_000056_010 Hb_000056_010 Hb_097646_010--Hb_000056_010 Hb_097646_010--Hb_003376_260 Hb_027380_230 Hb_027380_230 Hb_097646_010--Hb_027380_230 Hb_006420_020 Hb_006420_020 Hb_000571_150--Hb_006420_020 Hb_059641_010 Hb_059641_010 Hb_000571_150--Hb_059641_010 Hb_006745_010 Hb_006745_010 Hb_000571_150--Hb_006745_010 Hb_049958_010 Hb_049958_010 Hb_000571_150--Hb_049958_010 Hb_000979_240 Hb_000979_240 Hb_000571_150--Hb_000979_240 Hb_003895_030--Hb_002370_040 Hb_007481_030 Hb_007481_030 Hb_003895_030--Hb_007481_030 Hb_003895_030--Hb_002742_080 Hb_004935_080 Hb_004935_080 Hb_003895_030--Hb_004935_080 Hb_002320_070 Hb_002320_070 Hb_003895_030--Hb_002320_070 Hb_001052_040 Hb_001052_040 Hb_002742_080--Hb_001052_040 Hb_005333_030 Hb_005333_030 Hb_002742_080--Hb_005333_030 Hb_003710_040 Hb_003710_040 Hb_002742_080--Hb_003710_040 Hb_000261_290 Hb_000261_290 Hb_002742_080--Hb_000261_290 Hb_128376_010 Hb_128376_010 Hb_002742_080--Hb_128376_010 Hb_002742_080--Hb_002320_070 Hb_002370_040--Hb_007481_030 Hb_012395_080 Hb_012395_080 Hb_002370_040--Hb_012395_080 Hb_000136_190 Hb_000136_190 Hb_002370_040--Hb_000136_190 Hb_007223_010 Hb_007223_010 Hb_002370_040--Hb_007223_010 Hb_003376_260--Hb_024698_010 Hb_074197_020 Hb_074197_020 Hb_003376_260--Hb_074197_020 Hb_116420_040 Hb_116420_040 Hb_003376_260--Hb_116420_040 Hb_002301_310 Hb_002301_310 Hb_003376_260--Hb_002301_310 Hb_005048_140 Hb_005048_140 Hb_003376_260--Hb_005048_140 Hb_004657_090 Hb_004657_090 Hb_003376_260--Hb_004657_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.9529 47.7643 17.8258 39.3873 34.0475 49.0455
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.80201 1.618 10.6765 3.48118 13.3076

CAGE analysis