Hb_000571_150

Information

Type transcription factor
Description TF Family: GRAS
Location Contig571: 176177-177754
Sequence    

Annotation

kegg
ID rcu:RCOM_0847570
description transcription factor, putative
nr
ID XP_002526659.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q5NE24
description Nodulation-signaling pathway 2 protein OS=Medicago truncatula GN=NSP2 PE=1 SV=1
trembl
ID B9SKZ0
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0847570 PE=4 SV=1
Gene Ontology
ID GO:0006351
description nodulation-signaling pathway 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49362: 176661-177012
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000571_150 0.0 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
2 Hb_006420_020 0.1462142732 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
3 Hb_100525_010 0.1570308767 - - PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
4 Hb_059641_010 0.1691121305 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
5 Hb_006745_010 0.1800746907 - - PREDICTED: uncharacterized protein LOC105640095 [Jatropha curcas]
6 Hb_049958_010 0.1960954303 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
7 Hb_000979_240 0.2095530107 transcription factor TF Family: GRAS PREDICTED: DELLA protein GAIP-B [Jatropha curcas]
8 Hb_169329_010 0.2150664638 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X2 [Jatropha curcas]
9 Hb_097646_010 0.2173924666 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
10 Hb_000768_010 0.2176735586 - - PREDICTED: protein TRANSPARENT TESTA 12-like isoform X3 [Citrus sinensis]
11 Hb_001691_150 0.2177619134 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 24 [Jatropha curcas]
12 Hb_002316_050 0.2215623205 - - conserved hypothetical protein [Ricinus communis]
13 Hb_011164_010 0.2254462431 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
14 Hb_000086_100 0.227381427 - - hypothetical protein POPTR_0005s24730g [Populus trichocarpa]
15 Hb_010831_020 0.2276592458 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
16 Hb_001950_030 0.2287166427 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]
17 Hb_116638_010 0.2289015962 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001493_080 0.2305535981 - - PREDICTED: RING-H2 finger protein ATL3-like [Jatropha curcas]
19 Hb_003155_020 0.2336609742 - - Rpp4C3 [Medicago truncatula]
20 Hb_000152_640 0.2350275061 - - PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]

Gene co-expression network

sample Hb_000571_150 Hb_000571_150 Hb_006420_020 Hb_006420_020 Hb_000571_150--Hb_006420_020 Hb_100525_010 Hb_100525_010 Hb_000571_150--Hb_100525_010 Hb_059641_010 Hb_059641_010 Hb_000571_150--Hb_059641_010 Hb_006745_010 Hb_006745_010 Hb_000571_150--Hb_006745_010 Hb_049958_010 Hb_049958_010 Hb_000571_150--Hb_049958_010 Hb_000979_240 Hb_000979_240 Hb_000571_150--Hb_000979_240 Hb_080147_080 Hb_080147_080 Hb_006420_020--Hb_080147_080 Hb_000878_100 Hb_000878_100 Hb_006420_020--Hb_000878_100 Hb_003125_030 Hb_003125_030 Hb_006420_020--Hb_003125_030 Hb_010831_020 Hb_010831_020 Hb_006420_020--Hb_010831_020 Hb_006420_020--Hb_006745_010 Hb_097646_010 Hb_097646_010 Hb_100525_010--Hb_097646_010 Hb_003895_030 Hb_003895_030 Hb_100525_010--Hb_003895_030 Hb_002742_080 Hb_002742_080 Hb_100525_010--Hb_002742_080 Hb_002370_040 Hb_002370_040 Hb_100525_010--Hb_002370_040 Hb_003376_260 Hb_003376_260 Hb_100525_010--Hb_003376_260 Hb_059641_010--Hb_049958_010 Hb_169329_010 Hb_169329_010 Hb_059641_010--Hb_169329_010 Hb_003854_020 Hb_003854_020 Hb_059641_010--Hb_003854_020 Hb_144550_020 Hb_144550_020 Hb_059641_010--Hb_144550_020 Hb_000123_030 Hb_000123_030 Hb_059641_010--Hb_000123_030 Hb_030827_060 Hb_030827_060 Hb_006745_010--Hb_030827_060 Hb_000422_110 Hb_000422_110 Hb_006745_010--Hb_000422_110 Hb_001307_010 Hb_001307_010 Hb_006745_010--Hb_001307_010 Hb_004648_070 Hb_004648_070 Hb_006745_010--Hb_004648_070 Hb_006745_010--Hb_000979_240 Hb_002999_060 Hb_002999_060 Hb_006745_010--Hb_002999_060 Hb_179679_010 Hb_179679_010 Hb_049958_010--Hb_179679_010 Hb_126506_010 Hb_126506_010 Hb_049958_010--Hb_126506_010 Hb_049958_010--Hb_169329_010 Hb_049958_010--Hb_000123_030 Hb_000175_350 Hb_000175_350 Hb_000979_240--Hb_000175_350 Hb_001488_270 Hb_001488_270 Hb_000979_240--Hb_001488_270 Hb_000197_290 Hb_000197_290 Hb_000979_240--Hb_000197_290 Hb_000751_140 Hb_000751_140 Hb_000979_240--Hb_000751_140 Hb_000599_130 Hb_000599_130 Hb_000979_240--Hb_000599_130 Hb_000574_510 Hb_000574_510 Hb_000979_240--Hb_000574_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.680024 2.37243 0.219115 1.67243 1.20082 1.59565
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.11786 0.0927263 0.349085 0.101716 0.194388

CAGE analysis