Hb_059641_010

Information

Type -
Description -
Location Contig59641: 2506-3240
Sequence    

Annotation

kegg
ID pop:POPTR_0005s063002
description POPTRDRAFT_558400; hypothetical protein
nr
ID XP_011023525.1
description PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
swissprot
ID Q42484
description Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1
trembl
ID B9H474
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0005s063002g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_059641_010 0.0 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
2 Hb_049958_010 0.1531529181 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
3 Hb_000571_150 0.1691121305 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
4 Hb_169329_010 0.1725901389 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X2 [Jatropha curcas]
5 Hb_003854_020 0.1758233566 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
6 Hb_144550_020 0.1979709485 - - -
7 Hb_000123_030 0.2021822978 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
8 Hb_001278_040 0.2028058598 - - PREDICTED: lipid phosphate phosphatase 1-like isoform X1 [Jatropha curcas]
9 Hb_006420_020 0.2059013963 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
10 Hb_009848_020 0.2065838028 - - hypothetical protein VITISV_026702 [Vitis vinifera]
11 Hb_116638_010 0.2129244343 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001907_100 0.2174215695 - - PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
13 Hb_003155_020 0.2179607657 - - Rpp4C3 [Medicago truncatula]
14 Hb_100525_010 0.2187777428 - - PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
15 Hb_000979_240 0.2197746612 transcription factor TF Family: GRAS PREDICTED: DELLA protein GAIP-B [Jatropha curcas]
16 Hb_001493_010 0.22015924 - - triacylglycerol acidic lipase TAL4 [Ricinus communis]
17 Hb_154538_010 0.2209443272 - - -
18 Hb_007846_040 0.222039601 - - PREDICTED: uncharacterized protein LOC105646691 [Jatropha curcas]
19 Hb_118720_010 0.2224200427 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
20 Hb_126506_010 0.224093863 - - Disease resistance protein RPS5, putative [Ricinus communis]

Gene co-expression network

sample Hb_059641_010 Hb_059641_010 Hb_049958_010 Hb_049958_010 Hb_059641_010--Hb_049958_010 Hb_000571_150 Hb_000571_150 Hb_059641_010--Hb_000571_150 Hb_169329_010 Hb_169329_010 Hb_059641_010--Hb_169329_010 Hb_003854_020 Hb_003854_020 Hb_059641_010--Hb_003854_020 Hb_144550_020 Hb_144550_020 Hb_059641_010--Hb_144550_020 Hb_000123_030 Hb_000123_030 Hb_059641_010--Hb_000123_030 Hb_049958_010--Hb_000571_150 Hb_179679_010 Hb_179679_010 Hb_049958_010--Hb_179679_010 Hb_126506_010 Hb_126506_010 Hb_049958_010--Hb_126506_010 Hb_049958_010--Hb_169329_010 Hb_049958_010--Hb_000123_030 Hb_006420_020 Hb_006420_020 Hb_000571_150--Hb_006420_020 Hb_100525_010 Hb_100525_010 Hb_000571_150--Hb_100525_010 Hb_006745_010 Hb_006745_010 Hb_000571_150--Hb_006745_010 Hb_000979_240 Hb_000979_240 Hb_000571_150--Hb_000979_240 Hb_000258_360 Hb_000258_360 Hb_169329_010--Hb_000258_360 Hb_177152_010 Hb_177152_010 Hb_169329_010--Hb_177152_010 Hb_004935_080 Hb_004935_080 Hb_169329_010--Hb_004935_080 Hb_013358_100 Hb_013358_100 Hb_169329_010--Hb_013358_100 Hb_000136_190 Hb_000136_190 Hb_169329_010--Hb_000136_190 Hb_003854_020--Hb_000123_030 Hb_009848_020 Hb_009848_020 Hb_003854_020--Hb_009848_020 Hb_003854_020--Hb_000136_190 Hb_003854_020--Hb_144550_020 Hb_003060_050 Hb_003060_050 Hb_003854_020--Hb_003060_050 Hb_012395_080 Hb_012395_080 Hb_144550_020--Hb_012395_080 Hb_006269_040 Hb_006269_040 Hb_144550_020--Hb_006269_040 Hb_144550_020--Hb_000136_190 Hb_002370_040 Hb_002370_040 Hb_144550_020--Hb_002370_040 Hb_000330_160 Hb_000330_160 Hb_144550_020--Hb_000330_160 Hb_000123_020 Hb_000123_020 Hb_000123_030--Hb_000123_020 Hb_022880_020 Hb_022880_020 Hb_000123_030--Hb_022880_020 Hb_002471_020 Hb_002471_020 Hb_000123_030--Hb_002471_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.74474 5.01533 0.485563 3.53884 1.53623 4.26936
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.302564 0.0594691 0.106681 0.893438 0.354902

CAGE analysis