Hb_009848_020

Information

Type -
Description -
Location Contig9848: 44191-45019
Sequence    

Annotation

kegg
ID -
description -
nr
ID CAN62207.1
description hypothetical protein VITISV_026702 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5C987
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026702 PE=4 SV=1
Gene Ontology
ID GO:0004467
description probable acyl-activating enzyme chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64607: 6484-44374
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009848_020 0.0 - - hypothetical protein VITISV_026702 [Vitis vinifera]
2 Hb_084470_010 0.1764413164 - - Disease resistance protein RPS5, putative [Ricinus communis]
3 Hb_003854_020 0.1789619738 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
4 Hb_059641_010 0.2065838028 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
5 Hb_000123_030 0.2333858502 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
6 Hb_144550_020 0.2334209924 - - -
7 Hb_000330_160 0.2564279346 - - hypothetical protein JCGZ_04462 [Jatropha curcas]
8 Hb_002546_040 0.2589452842 - - hypothetical protein CISIN_1g005599mg [Citrus sinensis]
9 Hb_006913_050 0.2599131424 - - -
10 Hb_000123_020 0.2648802468 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At1g61190 [Vitis vinifera]
11 Hb_141212_010 0.2720146209 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
12 Hb_012395_080 0.2724431306 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19890 [Jatropha curcas]
13 Hb_012404_040 0.2737735739 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Jatropha curcas]
14 Hb_005144_030 0.2741307265 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
15 Hb_049958_010 0.2755082405 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
16 Hb_000136_190 0.2782067475 - - PREDICTED: protein-S-isoprenylcysteine O-methyltransferase A-like isoform X1 [Jatropha curcas]
17 Hb_000733_270 0.2787091868 - - PREDICTED: serine/threonine-protein phosphatase PP1-alpha catalytic subunit [Dasypus novemcinctus]
18 Hb_003157_030 0.279754985 - - PREDICTED: exocyst complex component EXO70A1-like [Nicotiana sylvestris]
19 Hb_004361_010 0.2851821764 - - hypothetical protein CISIN_1g047084mg, partial [Citrus sinensis]
20 Hb_029977_050 0.2854710189 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_009848_020 Hb_009848_020 Hb_084470_010 Hb_084470_010 Hb_009848_020--Hb_084470_010 Hb_003854_020 Hb_003854_020 Hb_009848_020--Hb_003854_020 Hb_059641_010 Hb_059641_010 Hb_009848_020--Hb_059641_010 Hb_000123_030 Hb_000123_030 Hb_009848_020--Hb_000123_030 Hb_144550_020 Hb_144550_020 Hb_009848_020--Hb_144550_020 Hb_000330_160 Hb_000330_160 Hb_009848_020--Hb_000330_160 Hb_000733_270 Hb_000733_270 Hb_084470_010--Hb_000733_270 Hb_003157_030 Hb_003157_030 Hb_084470_010--Hb_003157_030 Hb_141212_010 Hb_141212_010 Hb_084470_010--Hb_141212_010 Hb_084470_010--Hb_003854_020 Hb_018118_020 Hb_018118_020 Hb_084470_010--Hb_018118_020 Hb_003854_020--Hb_059641_010 Hb_003854_020--Hb_000123_030 Hb_000136_190 Hb_000136_190 Hb_003854_020--Hb_000136_190 Hb_003854_020--Hb_144550_020 Hb_003060_050 Hb_003060_050 Hb_003854_020--Hb_003060_050 Hb_049958_010 Hb_049958_010 Hb_059641_010--Hb_049958_010 Hb_000571_150 Hb_000571_150 Hb_059641_010--Hb_000571_150 Hb_169329_010 Hb_169329_010 Hb_059641_010--Hb_169329_010 Hb_059641_010--Hb_144550_020 Hb_059641_010--Hb_000123_030 Hb_000123_020 Hb_000123_020 Hb_000123_030--Hb_000123_020 Hb_022880_020 Hb_022880_020 Hb_000123_030--Hb_022880_020 Hb_000123_030--Hb_049958_010 Hb_002471_020 Hb_002471_020 Hb_000123_030--Hb_002471_020 Hb_012395_080 Hb_012395_080 Hb_144550_020--Hb_012395_080 Hb_006269_040 Hb_006269_040 Hb_144550_020--Hb_006269_040 Hb_144550_020--Hb_000136_190 Hb_002370_040 Hb_002370_040 Hb_144550_020--Hb_002370_040 Hb_144550_020--Hb_000330_160 Hb_005144_030 Hb_005144_030 Hb_000330_160--Hb_005144_030 Hb_002742_070 Hb_002742_070 Hb_000330_160--Hb_002742_070 Hb_011953_030 Hb_011953_030 Hb_000330_160--Hb_011953_030 Hb_003814_030 Hb_003814_030 Hb_000330_160--Hb_003814_030 Hb_001031_040 Hb_001031_040 Hb_000330_160--Hb_001031_040 Hb_000330_160--Hb_000136_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.29814 3.47477 0 2.83159 1.24473 5.01151
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.48514 0.760991

CAGE analysis