Hb_018118_020

Information

Type -
Description -
Location Contig18118: 36580-36846
Sequence    

Annotation

kegg
ID -
description -
nr
ID CBI24200.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID W5BFP6
description Uncharacterized protein OS=Triticum aestivum PE=4 SV=1
Gene Ontology
ID GO:0000166
description multidrug resistance protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17598: 36584-36898
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018118_020 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_159307_010 0.1970386079 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
3 Hb_002737_020 0.2049145807 - - metallothionein [Bruguiera gymnorhiza]
4 Hb_002370_040 0.2224362236 - - PREDICTED: uncharacterized protein LOC105644336 [Jatropha curcas]
5 Hb_005715_020 0.2274108651 - - PREDICTED: ras-related protein RABC2a-like isoform X2 [Jatropha curcas]
6 Hb_116638_010 0.2300270148 - - conserved hypothetical protein [Ricinus communis]
7 Hb_084470_010 0.2302438055 - - Disease resistance protein RPS5, putative [Ricinus communis]
8 Hb_000123_020 0.2330258215 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At1g61190 [Vitis vinifera]
9 Hb_118720_010 0.2345403292 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
10 Hb_049958_010 0.2348258494 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
11 Hb_002783_010 0.2365658617 - - PREDICTED: uncharacterized protein LOC105635318 [Jatropha curcas]
12 Hb_000123_030 0.2373831273 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
13 Hb_012395_080 0.2423121002 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19890 [Jatropha curcas]
14 Hb_169329_010 0.2439293926 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X2 [Jatropha curcas]
15 Hb_007481_030 0.2465266594 - - PREDICTED: uncharacterized protein LOC105628433 [Jatropha curcas]
16 Hb_003157_030 0.2471549665 - - PREDICTED: exocyst complex component EXO70A1-like [Nicotiana sylvestris]
17 Hb_144550_020 0.2480704115 - - -
18 Hb_007846_040 0.2539447598 - - PREDICTED: uncharacterized protein LOC105646691 [Jatropha curcas]
19 Hb_059641_010 0.2558809396 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
20 Hb_006816_340 0.2587231821 - - -

Gene co-expression network

sample Hb_018118_020 Hb_018118_020 Hb_159307_010 Hb_159307_010 Hb_018118_020--Hb_159307_010 Hb_002737_020 Hb_002737_020 Hb_018118_020--Hb_002737_020 Hb_002370_040 Hb_002370_040 Hb_018118_020--Hb_002370_040 Hb_005715_020 Hb_005715_020 Hb_018118_020--Hb_005715_020 Hb_116638_010 Hb_116638_010 Hb_018118_020--Hb_116638_010 Hb_084470_010 Hb_084470_010 Hb_018118_020--Hb_084470_010 Hb_159307_010--Hb_116638_010 Hb_130134_030 Hb_130134_030 Hb_159307_010--Hb_130134_030 Hb_003376_070 Hb_003376_070 Hb_159307_010--Hb_003376_070 Hb_001158_180 Hb_001158_180 Hb_159307_010--Hb_001158_180 Hb_000307_250 Hb_000307_250 Hb_159307_010--Hb_000307_250 Hb_000123_020 Hb_000123_020 Hb_002737_020--Hb_000123_020 Hb_000123_030 Hb_000123_030 Hb_002737_020--Hb_000123_030 Hb_076233_020 Hb_076233_020 Hb_002737_020--Hb_076233_020 Hb_097433_020 Hb_097433_020 Hb_002737_020--Hb_097433_020 Hb_003772_020 Hb_003772_020 Hb_002737_020--Hb_003772_020 Hb_007481_030 Hb_007481_030 Hb_002370_040--Hb_007481_030 Hb_012395_080 Hb_012395_080 Hb_002370_040--Hb_012395_080 Hb_003895_030 Hb_003895_030 Hb_002370_040--Hb_003895_030 Hb_000136_190 Hb_000136_190 Hb_002370_040--Hb_000136_190 Hb_007223_010 Hb_007223_010 Hb_002370_040--Hb_007223_010 Hb_100525_010 Hb_100525_010 Hb_002370_040--Hb_100525_010 Hb_007021_030 Hb_007021_030 Hb_005715_020--Hb_007021_030 Hb_010997_100 Hb_010997_100 Hb_005715_020--Hb_010997_100 Hb_004650_090 Hb_004650_090 Hb_005715_020--Hb_004650_090 Hb_005715_020--Hb_097433_020 Hb_001396_150 Hb_001396_150 Hb_005715_020--Hb_001396_150 Hb_015354_010 Hb_015354_010 Hb_116638_010--Hb_015354_010 Hb_116638_010--Hb_003376_070 Hb_001052_040 Hb_001052_040 Hb_116638_010--Hb_001052_040 Hb_118720_010 Hb_118720_010 Hb_116638_010--Hb_118720_010 Hb_002742_080 Hb_002742_080 Hb_116638_010--Hb_002742_080 Hb_009848_020 Hb_009848_020 Hb_084470_010--Hb_009848_020 Hb_000733_270 Hb_000733_270 Hb_084470_010--Hb_000733_270 Hb_003157_030 Hb_003157_030 Hb_084470_010--Hb_003157_030 Hb_141212_010 Hb_141212_010 Hb_084470_010--Hb_141212_010 Hb_003854_020 Hb_003854_020 Hb_084470_010--Hb_003854_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.99575 10.5105 3.20569 2.6912 2.23527 17.1504
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.539066 1.89604 0.580692

CAGE analysis