Hb_001158_180

Information

Type -
Description -
Location Contig1158: 114261-116665
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04755: 114475-114840
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001158_180 0.0 - - -
2 Hb_000307_250 0.1309015215 - - PREDICTED: probable nucleoredoxin 2 [Jatropha curcas]
3 Hb_001247_140 0.1583548323 - - -
4 Hb_089435_010 0.1600850272 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]
5 Hb_007348_030 0.1637712452 - - PREDICTED: uncharacterized protein LOC105645596 isoform X2 [Jatropha curcas]
6 Hb_000441_160 0.165761139 - - ARF GTPase activator, putative [Ricinus communis]
7 Hb_007680_020 0.1678714539 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
8 Hb_005914_090 0.1724332059 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
9 Hb_000365_060 0.1737952254 - - 5'->3' exoribonuclease, putative [Ricinus communis]
10 Hb_010189_010 0.1750980193 - - -
11 Hb_000453_080 0.1763293977 - - nucleic acid binding protein, putative [Ricinus communis]
12 Hb_013753_010 0.1787005259 - - PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]
13 Hb_000016_180 0.1846317775 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
14 Hb_139859_010 0.1868130879 - - PREDICTED: cell division control protein 48 homolog D-like [Nicotiana sylvestris]
15 Hb_000792_110 0.1892268228 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
16 Hb_183980_010 0.1899432076 - - PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
17 Hb_003376_070 0.1902094932 - - hypothetical protein B456_009G419800 [Gossypium raimondii]
18 Hb_159307_010 0.1917014576 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
19 Hb_003299_080 0.1917568384 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
20 Hb_012016_020 0.1918236728 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105636265 [Jatropha curcas]

Gene co-expression network

sample Hb_001158_180 Hb_001158_180 Hb_000307_250 Hb_000307_250 Hb_001158_180--Hb_000307_250 Hb_001247_140 Hb_001247_140 Hb_001158_180--Hb_001247_140 Hb_089435_010 Hb_089435_010 Hb_001158_180--Hb_089435_010 Hb_007348_030 Hb_007348_030 Hb_001158_180--Hb_007348_030 Hb_000441_160 Hb_000441_160 Hb_001158_180--Hb_000441_160 Hb_007680_020 Hb_007680_020 Hb_001158_180--Hb_007680_020 Hb_000307_250--Hb_007348_030 Hb_000307_250--Hb_007680_020 Hb_000307_250--Hb_000441_160 Hb_000244_240 Hb_000244_240 Hb_000307_250--Hb_000244_240 Hb_002986_050 Hb_002986_050 Hb_000307_250--Hb_002986_050 Hb_003299_080 Hb_003299_080 Hb_001247_140--Hb_003299_080 Hb_000365_060 Hb_000365_060 Hb_001247_140--Hb_000365_060 Hb_013753_010 Hb_013753_010 Hb_001247_140--Hb_013753_010 Hb_000375_370 Hb_000375_370 Hb_001247_140--Hb_000375_370 Hb_031089_030 Hb_031089_030 Hb_001247_140--Hb_031089_030 Hb_005122_060 Hb_005122_060 Hb_001247_140--Hb_005122_060 Hb_005399_020 Hb_005399_020 Hb_089435_010--Hb_005399_020 Hb_012395_160 Hb_012395_160 Hb_089435_010--Hb_012395_160 Hb_000116_280 Hb_000116_280 Hb_089435_010--Hb_000116_280 Hb_005038_020 Hb_005038_020 Hb_089435_010--Hb_005038_020 Hb_000367_290 Hb_000367_290 Hb_089435_010--Hb_000367_290 Hb_005725_020 Hb_005725_020 Hb_089435_010--Hb_005725_020 Hb_007348_030--Hb_000244_240 Hb_101151_020 Hb_101151_020 Hb_007348_030--Hb_101151_020 Hb_007348_030--Hb_000365_060 Hb_000120_510 Hb_000120_510 Hb_007348_030--Hb_000120_510 Hb_001278_060 Hb_001278_060 Hb_007348_030--Hb_001278_060 Hb_001301_210 Hb_001301_210 Hb_007348_030--Hb_001301_210 Hb_002159_040 Hb_002159_040 Hb_000441_160--Hb_002159_040 Hb_011497_010 Hb_011497_010 Hb_000441_160--Hb_011497_010 Hb_000441_160--Hb_000244_240 Hb_005000_270 Hb_005000_270 Hb_000441_160--Hb_005000_270 Hb_003716_020 Hb_003716_020 Hb_000441_160--Hb_003716_020 Hb_000441_160--Hb_007348_030 Hb_006615_100 Hb_006615_100 Hb_007680_020--Hb_006615_100 Hb_007680_020--Hb_005122_060 Hb_001195_150 Hb_001195_150 Hb_007680_020--Hb_001195_150 Hb_007257_050 Hb_007257_050 Hb_007680_020--Hb_007257_050 Hb_000281_010 Hb_000281_010 Hb_007680_020--Hb_000281_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.74328 4.68719 0.604637 1.06255 5.86596 14.179
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.409361 1.07197 2.35594 0.758304 0.3999

CAGE analysis