Hb_089435_010

Information

Type -
Description -
Location Contig89435: 3-455
Sequence    

Annotation

kegg
ID vvi:100854686
description pentatricopeptide repeat-containing protein At4g02750-like
nr
ID XP_010658696.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]
swissprot
ID Q9FK93
description Pentatricopeptide repeat-containing protein At5g39680 OS=Arabidopsis thaliana GN=EMB2744 PE=1 SV=1
trembl
ID F6I5V4
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0074g00410 PE=4 SV=1
Gene Ontology
ID GO:0005739
description pentatricopeptide repeat-containing protein at4g02750-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089435_010 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]
2 Hb_005399_020 0.0896748373 - - hypothetical protein CISIN_1g022820mg [Citrus sinensis]
3 Hb_012395_160 0.1063637263 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
4 Hb_000116_280 0.1163843679 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
5 Hb_005038_020 0.1176504436 - - WD-repeat protein, putative [Ricinus communis]
6 Hb_000367_290 0.1287549623 - - PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]
7 Hb_005725_020 0.1368861959 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 [Jatropha curcas]
8 Hb_000685_080 0.1371161151 - - protein binding protein, putative [Ricinus communis]
9 Hb_000152_890 0.137829624 - - hypothetical protein JCGZ_26265 [Jatropha curcas]
10 Hb_000174_200 0.1396162263 - - PREDICTED: pre-mRNA-splicing factor 38 [Jatropha curcas]
11 Hb_002609_010 0.140293638 - - PREDICTED: uncharacterized protein LOC105630866 [Jatropha curcas]
12 Hb_000106_040 0.1410097651 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]
13 Hb_012016_020 0.1426189248 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105636265 [Jatropha curcas]
14 Hb_148209_020 0.1434276 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
15 Hb_002341_030 0.1453995991 - - PREDICTED: transcription factor bHLH140 [Jatropha curcas]
16 Hb_000487_100 0.1462869807 - - PREDICTED: protein unc-45 homolog A [Jatropha curcas]
17 Hb_002849_080 0.149532695 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
18 Hb_004032_350 0.1501374793 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
19 Hb_001498_030 0.1507279399 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
20 Hb_000200_140 0.1510394391 - - PREDICTED: uncharacterized protein LOC104591989 [Nelumbo nucifera]

Gene co-expression network

sample Hb_089435_010 Hb_089435_010 Hb_005399_020 Hb_005399_020 Hb_089435_010--Hb_005399_020 Hb_012395_160 Hb_012395_160 Hb_089435_010--Hb_012395_160 Hb_000116_280 Hb_000116_280 Hb_089435_010--Hb_000116_280 Hb_005038_020 Hb_005038_020 Hb_089435_010--Hb_005038_020 Hb_000367_290 Hb_000367_290 Hb_089435_010--Hb_000367_290 Hb_005725_020 Hb_005725_020 Hb_089435_010--Hb_005725_020 Hb_005399_020--Hb_000116_280 Hb_005399_020--Hb_012395_160 Hb_005399_020--Hb_005038_020 Hb_000685_080 Hb_000685_080 Hb_005399_020--Hb_000685_080 Hb_005399_020--Hb_000367_290 Hb_148209_020 Hb_148209_020 Hb_005399_020--Hb_148209_020 Hb_012395_160--Hb_148209_020 Hb_001584_170 Hb_001584_170 Hb_012395_160--Hb_001584_170 Hb_012395_160--Hb_005038_020 Hb_006316_070 Hb_006316_070 Hb_012395_160--Hb_006316_070 Hb_012395_160--Hb_000116_280 Hb_003018_160 Hb_003018_160 Hb_000116_280--Hb_003018_160 Hb_000116_280--Hb_000367_290 Hb_001975_020 Hb_001975_020 Hb_000116_280--Hb_001975_020 Hb_006816_300 Hb_006816_300 Hb_000116_280--Hb_006816_300 Hb_002105_080 Hb_002105_080 Hb_000116_280--Hb_002105_080 Hb_002849_080 Hb_002849_080 Hb_005038_020--Hb_002849_080 Hb_005038_020--Hb_148209_020 Hb_002078_420 Hb_002078_420 Hb_005038_020--Hb_002078_420 Hb_000174_200 Hb_000174_200 Hb_005038_020--Hb_000174_200 Hb_000152_890 Hb_000152_890 Hb_000367_290--Hb_000152_890 Hb_005295_040 Hb_005295_040 Hb_000367_290--Hb_005295_040 Hb_004032_350 Hb_004032_350 Hb_000367_290--Hb_004032_350 Hb_000367_290--Hb_001975_020 Hb_000413_130 Hb_000413_130 Hb_000367_290--Hb_000413_130 Hb_000487_100 Hb_000487_100 Hb_005725_020--Hb_000487_100 Hb_080147_030 Hb_080147_030 Hb_005725_020--Hb_080147_030 Hb_003125_060 Hb_003125_060 Hb_005725_020--Hb_003125_060 Hb_000107_530 Hb_000107_530 Hb_005725_020--Hb_000107_530 Hb_000720_070 Hb_000720_070 Hb_005725_020--Hb_000720_070 Hb_005725_020--Hb_000152_890
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.3168 24.5113 5.07468 4.40701 31.2801 38.0375
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.55293 6.10645 16.105 3.6132 1.13709

CAGE analysis