Hb_002986_050

Information

Type transcription factor
Description TF Family: B3
Location Contig2986: 18054-24178
Sequence    

Annotation

kegg
ID rcu:RCOM_1407360
description hypothetical protein
nr
ID XP_012079217.1
description PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
swissprot
ID Q0JP99
description B3 domain-containing protein Os01g0234100 OS=Oryza sativa subsp. japonica GN=Os01g0234100 PE=2 SV=1
trembl
ID A0A067K729
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12378 PE=4 SV=1
Gene Ontology
ID GO:0003677
description b3 domain-containing protein os01g0234100-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31180: 17915-24209 , PASA_asmbl_31181: 17929-23558
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002986_050 0.0 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
2 Hb_002475_050 0.0808077295 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
3 Hb_000212_280 0.0852455948 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
4 Hb_000732_020 0.0867435071 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
5 Hb_000372_040 0.0868777754 - - WD-repeat protein, putative [Ricinus communis]
6 Hb_005000_270 0.0886434219 - - unnamed protein product [Vitis vinifera]
7 Hb_003216_110 0.0897286603 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
8 Hb_002955_010 0.0922300997 - - PREDICTED: Werner syndrome ATP-dependent helicase homolog [Jatropha curcas]
9 Hb_003716_020 0.0929603029 - - PREDICTED: putative vesicle-associated membrane protein 726 [Jatropha curcas]
10 Hb_063047_010 0.0958632229 - - peroxisomal targeting signal type 1 (pts1) receptor, putative [Ricinus communis]
11 Hb_001582_030 0.0963100617 - - PREDICTED: uncharacterized protein LOC105639462 [Jatropha curcas]
12 Hb_000134_360 0.0974126707 - - PREDICTED: protein gar2 [Jatropha curcas]
13 Hb_001431_070 0.0984585245 - - PREDICTED: large proline-rich protein bag6-like isoform X2 [Jatropha curcas]
14 Hb_001969_040 0.1001155838 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
15 Hb_113216_010 0.1008202673 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
16 Hb_000814_090 0.1009710867 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002837_070 0.1023653884 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X1 [Jatropha curcas]
18 Hb_000165_130 0.1034626113 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
19 Hb_000573_040 0.1043237659 - - hypothetical protein JCGZ_19524 [Jatropha curcas]
20 Hb_009421_100 0.1052195832 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]

Gene co-expression network

sample Hb_002986_050 Hb_002986_050 Hb_002475_050 Hb_002475_050 Hb_002986_050--Hb_002475_050 Hb_000212_280 Hb_000212_280 Hb_002986_050--Hb_000212_280 Hb_000732_020 Hb_000732_020 Hb_002986_050--Hb_000732_020 Hb_000372_040 Hb_000372_040 Hb_002986_050--Hb_000372_040 Hb_005000_270 Hb_005000_270 Hb_002986_050--Hb_005000_270 Hb_003216_110 Hb_003216_110 Hb_002986_050--Hb_003216_110 Hb_002475_050--Hb_000372_040 Hb_079326_010 Hb_079326_010 Hb_002475_050--Hb_079326_010 Hb_004881_050 Hb_004881_050 Hb_002475_050--Hb_004881_050 Hb_002739_080 Hb_002739_080 Hb_002475_050--Hb_002739_080 Hb_002475_050--Hb_005000_270 Hb_025048_040 Hb_025048_040 Hb_000212_280--Hb_025048_040 Hb_113216_010 Hb_113216_010 Hb_000212_280--Hb_113216_010 Hb_002374_150 Hb_002374_150 Hb_000212_280--Hb_002374_150 Hb_000331_480 Hb_000331_480 Hb_000212_280--Hb_000331_480 Hb_000212_280--Hb_005000_270 Hb_005028_010 Hb_005028_010 Hb_000212_280--Hb_005028_010 Hb_002955_010 Hb_002955_010 Hb_000732_020--Hb_002955_010 Hb_000732_020--Hb_113216_010 Hb_001582_030 Hb_001582_030 Hb_000732_020--Hb_001582_030 Hb_000322_170 Hb_000322_170 Hb_000732_020--Hb_000322_170 Hb_000270_450 Hb_000270_450 Hb_000732_020--Hb_000270_450 Hb_000372_040--Hb_004881_050 Hb_000372_040--Hb_079326_010 Hb_000372_040--Hb_002739_080 Hb_000372_040--Hb_005000_270 Hb_000134_360 Hb_000134_360 Hb_000372_040--Hb_000134_360 Hb_005000_270--Hb_001582_030 Hb_002918_070 Hb_002918_070 Hb_005000_270--Hb_002918_070 Hb_005000_270--Hb_000134_360 Hb_005129_050 Hb_005129_050 Hb_005000_270--Hb_005129_050 Hb_003716_020 Hb_003716_020 Hb_005000_270--Hb_003716_020 Hb_000230_370 Hb_000230_370 Hb_003216_110--Hb_000230_370 Hb_001408_090 Hb_001408_090 Hb_003216_110--Hb_001408_090 Hb_002025_140 Hb_002025_140 Hb_003216_110--Hb_002025_140 Hb_001969_040 Hb_001969_040 Hb_003216_110--Hb_001969_040 Hb_003216_110--Hb_005028_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
66.2512 24.5082 11.3728 13.3332 62.4025 102.753
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.0961 11.1185 27.8363 11.7518 5.34204

CAGE analysis