Hb_001195_150

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig1195: 77121-80031
Sequence    

Annotation

kegg
ID pop:POPTR_0002s03640g
description POPTRDRAFT_551008; myb family transcription factor family protein
nr
ID XP_002300766.1
description myb family transcription factor family protein [Populus trichocarpa]
swissprot
ID Q1A173
description Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1
trembl
ID B9GRM8
description Myb family transcription factor family protein OS=Populus trichocarpa GN=POPTR_0002s03640g PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein radialis-like 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_150 0.0 transcription factor TF Family: MYB-related myb family transcription factor family protein [Populus trichocarpa]
2 Hb_006615_100 0.1237219365 - - PREDICTED: uncharacterized protein LOC105640683 isoform X1 [Jatropha curcas]
3 Hb_128376_010 0.1339706749 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_000116_460 0.1340362908 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
5 Hb_008246_030 0.1353965858 transcription factor TF Family: C3H tRNA-dihydrouridine synthase, putative [Ricinus communis]
6 Hb_000281_010 0.1431314376 - - hypothetical protein JCGZ_16194 [Jatropha curcas]
7 Hb_007680_020 0.1479218845 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
8 Hb_000045_320 0.1525070566 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
9 Hb_000997_410 0.1527616177 - - PREDICTED: uncharacterized protein LOC105632066 [Jatropha curcas]
10 Hb_001946_240 0.1550617786 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
11 Hb_002742_080 0.1569903457 - - unknown [Populus trichocarpa]
12 Hb_004920_060 0.1614471552 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
13 Hb_002805_170 0.1617725839 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
14 Hb_080147_080 0.1651669217 - - peroxiredoxin, putative [Ricinus communis]
15 Hb_010883_080 0.1656862733 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Jatropha curcas]
16 Hb_010128_070 0.1665920912 - - nucleic acid binding protein, putative [Ricinus communis]
17 Hb_114984_010 0.1667541992 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002000_060 0.1721098564 - - PREDICTED: protein LIKE COV 2 [Jatropha curcas]
19 Hb_000201_040 0.172155335 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
20 Hb_002612_010 0.1733090125 - - hypothetical protein JCGZ_19269 [Jatropha curcas]

Gene co-expression network

sample Hb_001195_150 Hb_001195_150 Hb_006615_100 Hb_006615_100 Hb_001195_150--Hb_006615_100 Hb_128376_010 Hb_128376_010 Hb_001195_150--Hb_128376_010 Hb_000116_460 Hb_000116_460 Hb_001195_150--Hb_000116_460 Hb_008246_030 Hb_008246_030 Hb_001195_150--Hb_008246_030 Hb_000281_010 Hb_000281_010 Hb_001195_150--Hb_000281_010 Hb_007680_020 Hb_007680_020 Hb_001195_150--Hb_007680_020 Hb_006615_100--Hb_007680_020 Hb_010128_070 Hb_010128_070 Hb_006615_100--Hb_010128_070 Hb_006615_100--Hb_000281_010 Hb_000997_410 Hb_000997_410 Hb_006615_100--Hb_000997_410 Hb_002804_050 Hb_002804_050 Hb_006615_100--Hb_002804_050 Hb_000152_670 Hb_000152_670 Hb_128376_010--Hb_000152_670 Hb_004017_040 Hb_004017_040 Hb_128376_010--Hb_004017_040 Hb_001052_040 Hb_001052_040 Hb_128376_010--Hb_001052_040 Hb_000261_290 Hb_000261_290 Hb_128376_010--Hb_000261_290 Hb_002742_080 Hb_002742_080 Hb_128376_010--Hb_002742_080 Hb_010883_080 Hb_010883_080 Hb_128376_010--Hb_010883_080 Hb_001946_240 Hb_001946_240 Hb_000116_460--Hb_001946_240 Hb_000116_460--Hb_000281_010 Hb_004920_060 Hb_004920_060 Hb_000116_460--Hb_004920_060 Hb_001473_080 Hb_001473_080 Hb_000116_460--Hb_001473_080 Hb_000116_460--Hb_010883_080 Hb_002675_040 Hb_002675_040 Hb_000116_460--Hb_002675_040 Hb_000363_380 Hb_000363_380 Hb_008246_030--Hb_000363_380 Hb_008246_030--Hb_004920_060 Hb_002612_010 Hb_002612_010 Hb_008246_030--Hb_002612_010 Hb_002301_270 Hb_002301_270 Hb_008246_030--Hb_002301_270 Hb_012404_070 Hb_012404_070 Hb_008246_030--Hb_012404_070 Hb_017895_020 Hb_017895_020 Hb_008246_030--Hb_017895_020 Hb_000281_010--Hb_010128_070 Hb_000685_080 Hb_000685_080 Hb_000281_010--Hb_000685_080 Hb_000281_010--Hb_001946_240 Hb_009646_050 Hb_009646_050 Hb_000281_010--Hb_009646_050 Hb_003106_150 Hb_003106_150 Hb_000281_010--Hb_003106_150 Hb_005122_060 Hb_005122_060 Hb_007680_020--Hb_005122_060 Hb_000307_250 Hb_000307_250 Hb_007680_020--Hb_000307_250 Hb_007257_050 Hb_007257_050 Hb_007680_020--Hb_007257_050 Hb_007680_020--Hb_000281_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.1181 9.8337 4.461 3.43168 10.2007 10.1672
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.67184 1.28239 1.06069 1.23497 2.49507

CAGE analysis