Hb_000997_410

Information

Type -
Description -
Location Contig997: 349939-352177
Sequence    

Annotation

kegg
ID rcu:RCOM_0910260
description hypothetical protein
nr
ID XP_012069736.1
description PREDICTED: uncharacterized protein LOC105632066 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZ95
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02256 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64896: 349821-352170 , PASA_asmbl_64897: 350884-352170
cDNA
(Sanger)
(ID:Location)		 004_L21.ab1: 351391-352170

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000997_410 0.0 - - PREDICTED: uncharacterized protein LOC105632066 [Jatropha curcas]
2 Hb_001731_020 0.1183317321 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
3 Hb_114984_010 0.1267415495 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006615_100 0.1284999445 - - PREDICTED: uncharacterized protein LOC105640683 isoform X1 [Jatropha curcas]
5 Hb_000261_290 0.1373550606 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
6 Hb_006588_050 0.1373764304 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
7 Hb_009620_030 0.139582766 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP59 [Jatropha curcas]
8 Hb_004920_060 0.1450513549 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
9 Hb_010128_070 0.1467961126 - - nucleic acid binding protein, putative [Ricinus communis]
10 Hb_000116_460 0.1477395338 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
11 Hb_128376_010 0.148177395 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_002742_080 0.1504084356 - - unknown [Populus trichocarpa]
13 Hb_005122_060 0.1511630381 - - unnamed protein product [Vitis vinifera]
14 Hb_003529_130 0.1520621088 - - PREDICTED: ribosome biogenesis protein BOP1 homolog isoform X1 [Jatropha curcas]
15 Hb_001195_150 0.1527616177 transcription factor TF Family: MYB-related myb family transcription factor family protein [Populus trichocarpa]
16 Hb_000120_510 0.1527991841 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
17 Hb_011953_030 0.1530638742 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0003s14450g [Populus trichocarpa]
18 Hb_010531_050 0.1532164653 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
19 Hb_110482_010 0.1548539932 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
20 Hb_031069_020 0.1563532242 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000997_410 Hb_000997_410 Hb_001731_020 Hb_001731_020 Hb_000997_410--Hb_001731_020 Hb_114984_010 Hb_114984_010 Hb_000997_410--Hb_114984_010 Hb_006615_100 Hb_006615_100 Hb_000997_410--Hb_006615_100 Hb_000261_290 Hb_000261_290 Hb_000997_410--Hb_000261_290 Hb_006588_050 Hb_006588_050 Hb_000997_410--Hb_006588_050 Hb_009620_030 Hb_009620_030 Hb_000997_410--Hb_009620_030 Hb_031069_020 Hb_031069_020 Hb_001731_020--Hb_031069_020 Hb_001489_070 Hb_001489_070 Hb_001731_020--Hb_001489_070 Hb_078477_040 Hb_078477_040 Hb_001731_020--Hb_078477_040 Hb_004920_060 Hb_004920_060 Hb_001731_020--Hb_004920_060 Hb_001731_020--Hb_000261_290 Hb_001731_020--Hb_006588_050 Hb_114984_010--Hb_004920_060 Hb_114984_010--Hb_001731_020 Hb_114984_010--Hb_001489_070 Hb_000116_460 Hb_000116_460 Hb_114984_010--Hb_000116_460 Hb_000021_020 Hb_000021_020 Hb_114984_010--Hb_000021_020 Hb_007680_020 Hb_007680_020 Hb_006615_100--Hb_007680_020 Hb_010128_070 Hb_010128_070 Hb_006615_100--Hb_010128_070 Hb_000281_010 Hb_000281_010 Hb_006615_100--Hb_000281_010 Hb_001195_150 Hb_001195_150 Hb_006615_100--Hb_001195_150 Hb_002804_050 Hb_002804_050 Hb_006615_100--Hb_002804_050 Hb_000098_130 Hb_000098_130 Hb_000261_290--Hb_000098_130 Hb_004899_070 Hb_004899_070 Hb_000261_290--Hb_004899_070 Hb_000120_620 Hb_000120_620 Hb_000261_290--Hb_000120_620 Hb_000313_340 Hb_000313_340 Hb_000261_290--Hb_000313_340 Hb_003097_180 Hb_003097_180 Hb_000261_290--Hb_003097_180 Hb_000261_290--Hb_006588_050 Hb_006588_050--Hb_004899_070 Hb_003866_020 Hb_003866_020 Hb_006588_050--Hb_003866_020 Hb_006816_300 Hb_006816_300 Hb_006588_050--Hb_006816_300 Hb_006588_050--Hb_000120_620 Hb_006588_050--Hb_003097_180 Hb_080147_040 Hb_080147_040 Hb_009620_030--Hb_080147_040 Hb_001900_120 Hb_001900_120 Hb_009620_030--Hb_001900_120 Hb_017895_020 Hb_017895_020 Hb_009620_030--Hb_017895_020 Hb_147737_010 Hb_147737_010 Hb_009620_030--Hb_147737_010 Hb_002675_040 Hb_002675_040 Hb_009620_030--Hb_002675_040 Hb_009620_030--Hb_006588_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
105.626 49.0139 25.4222 30.1203 54.6978 81.0749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.1788 3.92293 7.40744 31.2118 11.6394

CAGE analysis