Hb_000441_160

Information

Type -
Description -
Location Contig441: 200547-206422
Sequence    

Annotation

kegg
ID rcu:RCOM_1337990
description ARF GTPase activator, putative
nr
ID XP_002523190.1
description ARF GTPase activator, putative [Ricinus communis]
swissprot
ID Q9FVJ3
description ADP-ribosylation factor GTPase-activating protein AGD12 OS=Arabidopsis thaliana GN=AGD12 PE=1 SV=1
trembl
ID B9SB30
description ARF GTPase activator, putative OS=Ricinus communis GN=RCOM_1337990 PE=4 SV=1
Gene Ontology
ID GO:0005634
description adp-ribosylation factor gtpase-activating protein agd12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42638: 199772-206229
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000441_160 0.0 - - ARF GTPase activator, putative [Ricinus communis]
2 Hb_002159_040 0.0884656761 - - hypothetical protein PRUPE_ppa001563mg [Prunus persica]
3 Hb_011497_010 0.1022090889 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
4 Hb_000244_240 0.1058542094 - - ATP binding protein, putative [Ricinus communis]
5 Hb_005000_270 0.1105160023 - - unnamed protein product [Vitis vinifera]
6 Hb_003716_020 0.1114628561 - - PREDICTED: putative vesicle-associated membrane protein 726 [Jatropha curcas]
7 Hb_007348_030 0.1166538914 - - PREDICTED: uncharacterized protein LOC105645596 isoform X2 [Jatropha curcas]
8 Hb_002475_050 0.119716321 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
9 Hb_001040_120 0.1237942276 - - allantoinase, putative [Ricinus communis]
10 Hb_000453_080 0.124100635 - - nucleic acid binding protein, putative [Ricinus communis]
11 Hb_003581_020 0.1270501103 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
12 Hb_007668_020 0.1270512175 - - PREDICTED: uncharacterized protein LOC105631102 [Jatropha curcas]
13 Hb_002159_030 0.1285454929 - - AP-1 complex subunit gamma-2, putative [Ricinus communis]
14 Hb_003711_040 0.1297217095 - - PREDICTED: UBX domain-containing protein 4 [Jatropha curcas]
15 Hb_008406_140 0.1302559245 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
16 Hb_081879_030 0.1309892554 - - PREDICTED: U3 small nucleolar RNA-associated protein 21 homolog [Jatropha curcas]
17 Hb_083043_010 0.1310993317 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
18 Hb_002815_060 0.131387709 - - hypothetical protein B456_002G110500 [Gossypium raimondii]
19 Hb_005129_050 0.1321357401 - - PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Jatropha curcas]
20 Hb_003018_160 0.1352191761 - - PREDICTED: uncharacterized protein LOC105628876 [Jatropha curcas]

Gene co-expression network

sample Hb_000441_160 Hb_000441_160 Hb_002159_040 Hb_002159_040 Hb_000441_160--Hb_002159_040 Hb_011497_010 Hb_011497_010 Hb_000441_160--Hb_011497_010 Hb_000244_240 Hb_000244_240 Hb_000441_160--Hb_000244_240 Hb_005000_270 Hb_005000_270 Hb_000441_160--Hb_005000_270 Hb_003716_020 Hb_003716_020 Hb_000441_160--Hb_003716_020 Hb_007348_030 Hb_007348_030 Hb_000441_160--Hb_007348_030 Hb_002159_040--Hb_000244_240 Hb_002159_040--Hb_011497_010 Hb_004143_070 Hb_004143_070 Hb_002159_040--Hb_004143_070 Hb_002159_030 Hb_002159_030 Hb_002159_040--Hb_002159_030 Hb_000329_490 Hb_000329_490 Hb_002159_040--Hb_000329_490 Hb_003018_160 Hb_003018_160 Hb_011497_010--Hb_003018_160 Hb_011497_010--Hb_003716_020 Hb_001575_080 Hb_001575_080 Hb_011497_010--Hb_001575_080 Hb_011497_010--Hb_000244_240 Hb_000116_280 Hb_000116_280 Hb_011497_010--Hb_000116_280 Hb_001301_210 Hb_001301_210 Hb_000244_240--Hb_001301_210 Hb_000244_240--Hb_007348_030 Hb_046615_020 Hb_046615_020 Hb_000244_240--Hb_046615_020 Hb_000120_510 Hb_000120_510 Hb_000244_240--Hb_000120_510 Hb_000230_370 Hb_000230_370 Hb_000244_240--Hb_000230_370 Hb_001582_030 Hb_001582_030 Hb_005000_270--Hb_001582_030 Hb_002918_070 Hb_002918_070 Hb_005000_270--Hb_002918_070 Hb_000134_360 Hb_000134_360 Hb_005000_270--Hb_000134_360 Hb_005129_050 Hb_005129_050 Hb_005000_270--Hb_005129_050 Hb_000212_280 Hb_000212_280 Hb_005000_270--Hb_000212_280 Hb_005000_270--Hb_003716_020 Hb_007668_020 Hb_007668_020 Hb_003716_020--Hb_007668_020 Hb_003581_020 Hb_003581_020 Hb_003716_020--Hb_003581_020 Hb_000849_100 Hb_000849_100 Hb_003716_020--Hb_000849_100 Hb_006002_030 Hb_006002_030 Hb_003716_020--Hb_006002_030 Hb_101151_020 Hb_101151_020 Hb_007348_030--Hb_101151_020 Hb_000365_060 Hb_000365_060 Hb_007348_030--Hb_000365_060 Hb_007348_030--Hb_000120_510 Hb_001278_060 Hb_001278_060 Hb_007348_030--Hb_001278_060 Hb_007348_030--Hb_001301_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.6978 22.1822 16.5355 20.0349 50.7586 114.891
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.9922 9.97685 19.5692 15.2824 8.47003

CAGE analysis