Hb_076233_020

Information

Type transcription factor
Description TF Family: C2H2
Location Contig76233: 7803-8853
Sequence    

Annotation

kegg
ID eus:EUTSA_v10018249mg
description hypothetical protein
nr
ID XP_011003861.1
description PREDICTED: dnaJ homolog subfamily C member 21 [Populus euphratica]
swissprot
ID Q5F1R6
description DnaJ homolog subfamily C member 21 OS=Homo sapiens GN=DNAJC21 PE=1 SV=2
trembl
ID V4M9A4
description Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10018249mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description dnaj homolog subfamily c member 21

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_076233_020 0.0 transcription factor TF Family: C2H2 PREDICTED: dnaJ homolog subfamily C member 21 [Populus euphratica]
2 Hb_000997_010 0.1720406071 - - PREDICTED: FHA domain-containing protein At4g14490 isoform X2 [Jatropha curcas]
3 Hb_014361_050 0.1762221326 - - PREDICTED: uncharacterized protein ycf36 isoform X1 [Jatropha curcas]
4 Hb_055339_010 0.2047403649 - - EARLY-RESPONSIVE TO DEHYDRATION 7 family protein [Populus trichocarpa]
5 Hb_004570_050 0.2158225501 - - kinase, putative [Ricinus communis]
6 Hb_057247_010 0.2159405227 - - hypothetical protein JCGZ_04800 [Jatropha curcas]
7 Hb_169329_010 0.2331652215 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X2 [Jatropha curcas]
8 Hb_000258_360 0.2346721993 - - PREDICTED: uncharacterized protein LOC104455487 [Eucalyptus grandis]
9 Hb_006816_340 0.2395769756 - - -
10 Hb_068804_080 0.2444335119 - - PREDICTED: protein BRICK 1 [Jatropha curcas]
11 Hb_002737_020 0.2524427599 - - metallothionein [Bruguiera gymnorhiza]
12 Hb_018118_020 0.2609129985 - - unnamed protein product [Vitis vinifera]
13 Hb_048103_010 0.2635192623 - - -
14 Hb_049958_010 0.2694965828 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
15 Hb_134488_010 0.2695505687 - - -
16 Hb_182249_010 0.2705760241 - - -
17 Hb_000834_240 0.2767347527 - - hypothetical protein JCGZ_07230 [Jatropha curcas]
18 Hb_082945_020 0.2780208077 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
19 Hb_000179_180 0.2815795687 - - hypothetical protein EUGRSUZ_C031461, partial [Eucalyptus grandis]
20 Hb_001506_030 0.2830809716 - - DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_076233_020 Hb_076233_020 Hb_000997_010 Hb_000997_010 Hb_076233_020--Hb_000997_010 Hb_014361_050 Hb_014361_050 Hb_076233_020--Hb_014361_050 Hb_055339_010 Hb_055339_010 Hb_076233_020--Hb_055339_010 Hb_004570_050 Hb_004570_050 Hb_076233_020--Hb_004570_050 Hb_057247_010 Hb_057247_010 Hb_076233_020--Hb_057247_010 Hb_169329_010 Hb_169329_010 Hb_076233_020--Hb_169329_010 Hb_000997_010--Hb_014361_050 Hb_061466_020 Hb_061466_020 Hb_000997_010--Hb_061466_020 Hb_000997_010--Hb_055339_010 Hb_015928_020 Hb_015928_020 Hb_000997_010--Hb_015928_020 Hb_000997_010--Hb_004570_050 Hb_014361_050--Hb_015928_020 Hb_014361_050--Hb_061466_020 Hb_006286_010 Hb_006286_010 Hb_014361_050--Hb_006286_010 Hb_014361_050--Hb_055339_010 Hb_055339_010--Hb_004570_050 Hb_036693_010 Hb_036693_010 Hb_055339_010--Hb_036693_010 Hb_007188_060 Hb_007188_060 Hb_055339_010--Hb_007188_060 Hb_170532_010 Hb_170532_010 Hb_004570_050--Hb_170532_010 Hb_124961_010 Hb_124961_010 Hb_004570_050--Hb_124961_010 Hb_006816_340 Hb_006816_340 Hb_004570_050--Hb_006816_340 Hb_182249_010 Hb_182249_010 Hb_004570_050--Hb_182249_010 Hb_000179_180 Hb_000179_180 Hb_004570_050--Hb_000179_180 Hb_005155_020 Hb_005155_020 Hb_004570_050--Hb_005155_020 Hb_005883_040 Hb_005883_040 Hb_057247_010--Hb_005883_040 Hb_057247_010--Hb_004570_050 Hb_057247_010--Hb_006816_340 Hb_000136_190 Hb_000136_190 Hb_057247_010--Hb_000136_190 Hb_057247_010--Hb_182249_010 Hb_000258_360 Hb_000258_360 Hb_169329_010--Hb_000258_360 Hb_059641_010 Hb_059641_010 Hb_169329_010--Hb_059641_010 Hb_177152_010 Hb_177152_010 Hb_169329_010--Hb_177152_010 Hb_004935_080 Hb_004935_080 Hb_169329_010--Hb_004935_080 Hb_013358_100 Hb_013358_100 Hb_169329_010--Hb_013358_100 Hb_169329_010--Hb_000136_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0355177 0.125853 0.0822684 0.0670948 0.0333363 0.157563
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis